View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11260_high_12 (Length: 387)
Name: NF11260_high_12
Description: NF11260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11260_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 36955247 - 36954864
Alignment:
| Q |
1 |
aacgacggaggagttaagtgaaccgggttcaccggaggagataatgtattaccatattatccctgagtatcaaacggaagagagtatgtataatgctgtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36955247 |
aacgacggaggagttaagtgaaccgggttcaccggaggagataatgtattaccatattatccctgagtatcaaacggaagagagtatgtataatgctgtt |
36955148 |
T |
|
| Q |
101 |
aggagatttgggaaggttaagtatgagactttgaggttgaagtataaggttgtggctcaggaagctgatgggtctgttaaatttggagatggtgatgggt |
200 |
Q |
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| T |
36955147 |
aggagatttgggaaggttaggtatgagactttgaggttgaagtataaggttgtggctcaggaagctgatgggtctgttaaatttggagatggtgatgggt |
36955048 |
T |
|
| Q |
201 |
cgggttatttgtttgatccggatatttataccgatgggaggatttctgttcaagggattgatggggttttgtttcctgtgaaggag------------gt |
288 |
Q |
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| T |
36955047 |
cgggttatttgtttgatccggatatttataccgatgggaggatttctgttcaagggattgatggggttttgtttcctatgaaggaggagaaagaagttgt |
36954948 |
T |
|
| Q |
289 |
gccggtggagcgggttaaacccatttcgatgatgggtcaacccaggaaaggcgtcgttgaacacagaagaggtacgttactact |
372 |
Q |
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| T |
36954947 |
gccggtggagcaggttaaacccatttcgatgatgggtcaacccaggaaaggcgtcgttgaacacagaagaggtgcgttactact |
36954864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 17 - 276
Target Start/End: Original strand, 17749056 - 17749315
Alignment:
| Q |
17 |
agtgaaccgggttcaccggaggagataatgtattaccatattatccctgagtatcaaacggaagagagtatgtataatgctgttaggagatttgggaagg |
116 |
Q |
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| T |
17749056 |
agtgaaccgggttcaccggaacaaattatgtactatcatttgattcctgagtatcaaactgaagagagtatgtataatgctgttagaagatttgggaagg |
17749155 |
T |
|
| Q |
117 |
ttaagtatgagactttgaggttgaagtataaggttgtggctcaggaagctgatgggtctgttaaatttggagatggtgatgggtcgggttatttgtttga |
216 |
Q |
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| | |||||| |||||||| ||| ||||||||| ||| | |||||||||||||| |||||||| || |||||||||| |||| ||||||||||| |
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| T |
17749156 |
tgaggtatgatactttgagattgcctcataaggttgatgctgaagaagctgatgggtcggttaaattcgggcatggtgatggttcggcatatttgtttga |
17749255 |
T |
|
| Q |
217 |
tccggatatttataccgatgggaggatttctgttcaagggattgatggggttttgtttcc |
276 |
Q |
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| T |
17749256 |
cccggatatttatacggatgggaggatttctgtgcaagggattgatggagttttgtttcc |
17749315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 20 - 261
Target Start/End: Complemental strand, 43480308 - 43480067
Alignment:
| Q |
20 |
gaaccgggttcaccggaggagataatgtattaccatattatccctgagtatcaaacggaagagagtatgtataatgctgttaggagatttgggaaggtta |
119 |
Q |
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||||| ||| ||||||| |||| || || || ||||| || |||||||||||||| || |||||||||||||| || ||||| ||||||||||| ||| |
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| T |
43480308 |
gaaccaggtgcaccggaacagattatatactatcatataattcctgagtatcaaactgaggagagtatgtataacgccgttagaagatttgggaaaatta |
43480209 |
T |
|
| Q |
120 |
agtatgagactttgaggttgaagtataaggttgtggctcaggaagctgatgggtctgttaaatttggagatggtgatgggtcgggttatttgtttgatcc |
219 |
Q |
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| T |
43480208 |
gttatgatacgttgcgtttgccccataaggttgttgctcaggaatctgacggttctgttaaatttggtcacggtgattcttctgcttatttgtttgatcc |
43480109 |
T |
|
| Q |
220 |
ggatatttataccgatgggaggatttctgttcaagggattga |
261 |
Q |
| |
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|||||||| ||||| || || ||||| |||||||| ||||| |
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| T |
43480108 |
tgatatttacaccgacggtagaatttccgttcaaggtattga |
43480067 |
T |
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