View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11260_high_18 (Length: 306)

Name: NF11260_high_18
Description: NF11260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11260_high_18
NF11260_high_18
[»] chr4 (6 HSPs)
chr4 (9-292)||(33814703-33814986)
chr4 (187-249)||(11307334-11307396)
chr4 (187-249)||(47680673-47680735)
chr4 (218-264)||(38534496-38534542)
chr4 (187-260)||(20090545-20090618)
chr4 (221-249)||(47681223-47681251)
[»] chr5 (2 HSPs)
chr5 (190-262)||(28296058-28296130)
chr5 (168-240)||(27856164-27856234)
[»] chr1 (5 HSPs)
chr1 (144-262)||(11199934-11200050)
chr1 (186-248)||(26231700-26231762)
chr1 (168-287)||(38637545-38637662)
chr1 (168-258)||(11766012-11766100)
chr1 (222-261)||(48273306-48273345)
[»] chr2 (3 HSPs)
chr2 (185-264)||(14571878-14571957)
chr2 (176-274)||(8252608-8252704)
chr2 (187-247)||(19548196-19548256)
[»] chr3 (6 HSPs)
chr3 (176-262)||(43407669-43407755)
chr3 (197-262)||(54328774-54328839)
chr3 (187-249)||(40196155-40196217)
chr3 (187-249)||(43481640-43481702)
chr3 (187-240)||(43978628-43978681)
chr3 (187-247)||(23161956-23162016)
[»] chr8 (5 HSPs)
chr8 (199-258)||(42115199-42115258)
chr8 (175-280)||(5073024-5073127)
chr8 (174-239)||(11806729-11806794)
chr8 (168-249)||(5981486-5981565)
chr8 (208-248)||(12156399-12156439)
[»] chr7 (3 HSPs)
chr7 (187-240)||(11776400-11776453)
chr7 (187-259)||(33730086-33730158)
chr7 (227-270)||(33730413-33730456)
[»] scaffold0039 (1 HSPs)
scaffold0039 (175-249)||(29063-29137)


Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 9 - 292
Target Start/End: Complemental strand, 33814986 - 33814703
Alignment:
Q  9 agcataggtacctaattctttcttcaaatacttcaatatactaaattagacttggatctcttaagcaacgtctcgagtttgagatgagaaaacatggttg 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  33814986 agcataggtacctaattctttcttcaaatacttcaatatactaaattagatttggatctcttaagcaacgtctcgagtttgagatgagaaaacatggttg 33814887  T
Q  109 ggatgagagacttcatgttgagtacaagtgtaagttggtcaagtctcacatcgcatgtcaatggataaaatgttggatatatataagagaggtgacccgt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33814886 ggatgagagacttcatgttgagtacaagtgtaagttggtcaagtctcacatcgcatgtcaatggataaaatgttggatatatataagagaggtgacccgt 33814787  T
Q  209 atacctaatacattaaggttttgggtggagatatggtgtctccctctcttgtggccttggaacattttgccctgttgttgttcc 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33814786 atacctaatacattaaggttttgggtggagatatggtgtctccctctcttgtggccttggaacattttgccctgttgttgttcc 33814703  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 249
Target Start/End: Complemental strand, 11307396 - 11307334
Alignment:
Q  187 atatataagagaggtgacccgtatacctaatacattaaggttttgggtggagatatggtgtct 249  Q
    |||||||||||||| ||| ||||||||| || | |||| ||||||||||||||| ||||||||    
T  11307396 atatataagagaggggacacgtatacctgatgccttaatgttttgggtggagatgtggtgtct 11307334  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 249
Target Start/End: Original strand, 47680673 - 47680735
Alignment:
Q  187 atatataagagaggtgacccgtatacctaatacattaaggttttgggtggagatatggtgtct 249  Q
    ||||||| |||||| ||||| ||||||| || | |||||||||||||||||||| ||||||||    
T  47680673 atatatatgagaggagacccatatacctgatgccttaaggttttgggtggagatgtggtgtct 47680735  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 264
Target Start/End: Original strand, 38534496 - 38534542
Alignment:
Q  218 acattaaggttttgggtggagatatggtgtctccctctcttgtggcc 264  Q
    ||||||||||||||||||||||| | ||| |||||||| ||||||||    
T  38534496 acattaaggttttgggtggagatttagtgcctccctcttttgtggcc 38534542  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 260
Target Start/End: Complemental strand, 20090618 - 20090545
Alignment:
Q  187 atatataagagaggtgacccgtatacctaatacattaaggttttgggtggagatatggtgtctccctctcttgt 260  Q
    ||||||||||||||||||   |||||||||| ||||| |||||||| ||| ||  | ||||||||| |||||||    
T  20090618 atatataagagaggtgacttatatacctaatgcattagggttttggatggcgacgtcgtgtctccccctcttgt 20090545  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 249
Target Start/End: Original strand, 47681223 - 47681251
Alignment:
Q  221 ttaaggttttgggtggagatatggtgtct 249  Q
    |||||||||||||||||||||||||||||    
T  47681223 ttaaggttttgggtggagatatggtgtct 47681251  T

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Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 190 - 262
Target Start/End: Complemental strand, 28296130 - 28296058
Alignment:
Q  190 tataagagaggtgacccgtatacctaatacattaaggttttgggtggagatatggtgtctccctctcttgtgg 262  Q
    ||||||||||||||||| ||||||||||   |||||||||||||||||||| |||||||||||||||||||||    
T  28296130 tataagagaggtgacccatatacctaatctcttaaggttttgggtggagatgtggtgtctccctctcttgtgg 28296058  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 240
Target Start/End: Original strand, 27856164 - 27856234
Alignment:
Q  168 aatggataaaatgttggatatatataagagaggtgacccgtatacctaatacattaaggttttgggtggagat 240  Q
    ||||| |||||||||||||||  |||||||||||| | | |||||||||| | |||| |||||||||||||||    
T  27856164 aatgggtaaaatgttggatat--ataagagaggtggctcatatacctaatgccttaaagttttgggtggagat 27856234  T

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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 144 - 262
Target Start/End: Original strand, 11199934 - 11200050
Alignment:
Q  144 tggtcaagtctcacatcgcatgtcaatggataaaatgttggatatatataagagaggtgacccgtatacctaatacattaaggttttgggtggagatatg 243  Q
    |||| ||||||||||| || | | ||| | |||||||||||||||  |||||||||||||| | ||| |||||| | |||||||||||||||||||| ||    
T  11199934 tggttaagtctcacattgcctatgaataggtaaaatgttggatat--ataagagaggtgactcatatgcctaatgccttaaggttttgggtggagatgtg 11200031  T
Q  244 gtgtctccctctcttgtgg 262  Q
    | |||||||||| ||||||    
T  11200032 gcgtctccctctgttgtgg 11200050  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 186 - 248
Target Start/End: Complemental strand, 26231762 - 26231700
Alignment:
Q  186 tatatataagagaggtgacccgtatacctaatacattaaggttttgggtggagatatggtgtc 248  Q
    ||||||||||||||| ||||| |||||| | ||| |||||||||||||||||||| |||||||    
T  26231762 tatatataagagaggggacccatataccaattaccttaaggttttgggtggagatgtggtgtc 26231700  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 168 - 287
Target Start/End: Original strand, 38637545 - 38637662
Alignment:
Q  168 aatggataaaatgttggatatatataagagaggtgacccgtatacctaatacattaaggttttgggtggagatatggtgtctccctctcttgtggccttg 267  Q
    |||||||||||||||||  |||||  || |||||||||  |||||||||| | ||||||| ||||||||||||  ||  |||||||||||||| | | ||    
T  38637545 aatggataaaatgttggccatata--agtgaggtgacctatatacctaatgccttaaggtattgggtggagatgcggcatctccctctcttgtagtcctg 38637642  T
Q  268 gaacattttgccctgttgtt 287  Q
    || ||||| | |||||||||    
T  38637643 gagcatttgggcctgttgtt 38637662  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 258
Target Start/End: Complemental strand, 11766100 - 11766012
Alignment:
Q  168 aatggataaaatgttggatatatataagagaggtgacccgtatacctaatacattaaggttttgggtggagatatggtgtctccctctctt 258  Q
    ||||| ||||||||||||| ||||  |||||| |||||  |  ||||||| | |||||||||||||||||||| ||| |||||||||||||    
T  11766100 aatgggtaaaatgttggatttata--agagagttgacctattaacctaatgccttaaggttttgggtggagatgtggcgtctccctctctt 11766012  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 261
Target Start/End: Original strand, 48273306 - 48273345
Alignment:
Q  222 taaggttttgggtggagatatggtgtctccctctcttgtg 261  Q
    |||| |||||||||||||||||| ||||||||||||||||    
T  48273306 taagtttttgggtggagatatggcgtctccctctcttgtg 48273345  T

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Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 185 - 264
Target Start/End: Complemental strand, 14571957 - 14571878
Alignment:
Q  185 atatatataagagaggtgacccgtatacctaatacattaaggttttgggtggagatatggtgtctccctctcttgtggcc 264  Q
    ||||||||||||||| |||||||||| |||| |   |||||||||||| ||||||| |||| ||||||||||||||||||    
T  14571957 atatatataagagagatgacccgtattcctattggtttaaggttttggttggagatgtggtttctccctctcttgtggcc 14571878  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 176 - 274
Target Start/End: Complemental strand, 8252704 - 8252608
Alignment:
Q  176 aaatgttggatatatataagagaggtgacccgtatacctaatacattaaggttttgggtggagatatggtgtctccctctcttgtggccttggaacatt 274  Q
    ||||||||||||  |||||||||||| || |||||||||||  | |||| ||||||| ||||||| ||||||| ||||||||| ||  |||||||||||    
T  8252704 aaatgttggata--tataagagaggtaactcgtatacctaacgccttaaagttttggatggagatgtggtgtcgccctctcttatgatcttggaacatt 8252608  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 19548196 - 19548256
Alignment:
Q  187 atatataagagaggtgacccgtatacctaatacattaaggttttgggtggagatatggtgt 247  Q
    |||||||||||||| ||||| |||| |||||   |||||||||||||||||||| ||||||    
T  19548196 atatataagagaggagacccatatatctaatgtcttaaggttttgggtggagatgtggtgt 19548256  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 176 - 262
Target Start/End: Original strand, 43407669 - 43407755
Alignment:
Q  176 aaatgttggatatatataagagaggtgacccgtatacctaatacattaaggttttgggtggagatatggtgtctccctctcttgtgg 262  Q
    ||||||||||||||||||||| ||||||| | ||||||||||    |||||||||||||||||||  || |||||||| ||||||||    
T  43407669 aaatgttggatatatataagaaaggtgactcatatacctaatgacgtaaggttttgggtggagatccggagtctccctatcttgtgg 43407755  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 262
Target Start/End: Complemental strand, 54328839 - 54328774
Alignment:
Q  197 gaggtgacccgtatacctaatacattaaggttttgggtggagatatggtgtctccctctcttgtgg 262  Q
    |||||||||| |||||||||  |  |||| |||||||||||||| |||||||||| ||||||||||    
T  54328839 gaggtgacccatatacctaacgccataagattttgggtggagatgtggtgtctccgtctcttgtgg 54328774  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 249
Target Start/End: Complemental strand, 40196217 - 40196155
Alignment:
Q  187 atatataagagaggtgacccgtatacctaatacattaaggttttgggtggagatatggtgtct 249  Q
    |||| ||||||||| ||||| ||||||| |  | |||||||||||||||||||||||| ||||    
T  40196217 atatgtaagagaggggacccatatacctgacgccttaaggttttgggtggagatatggagtct 40196155  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 249
Target Start/End: Original strand, 43481640 - 43481702
Alignment:
Q  187 atatataagagaggtgacccgtatacctaatacattaaggttttgggtggagatatggtgtct 249  Q
    |||||||||||||| ||||| ||||||| || ||||||| |||| ||||||||| ||| ||||    
T  43481640 atatataagagaggggacccatatacctgatgcattaagattttaggtggagatgtggcgtct 43481702  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 240
Target Start/End: Complemental strand, 43978681 - 43978628
Alignment:
Q  187 atatataagagaggtgacccgtatacctaatacattaaggttttgggtggagat 240  Q
    |||||||||||||| ||| | |||||||| | | ||||||||||||||||||||    
T  43978681 atatataagagaggagactcatatacctattgccttaaggttttgggtggagat 43978628  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 23161956 - 23162016
Alignment:
Q  187 atatataagagaggtgacccgtatacctaatacattaaggttttgggtggagatatggtgt 247  Q
    |||||||||||||||||| | ||||||  || | ||||| |||||||||||||| ||||||    
T  23161956 atatataagagaggtgactcatatacccgatgccttaagattttgggtggagatgtggtgt 23162016  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 258
Target Start/End: Original strand, 42115199 - 42115258
Alignment:
Q  199 ggtgacccgtatacctaatacattaaggttttgggtggagatatggtgtctccctctctt 258  Q
    ||||| || ||||| |||| |||||||||||||||||||||| |||||||||||||||||    
T  42115199 ggtgaaccatatacataatgcattaaggttttgggtggagatgtggtgtctccctctctt 42115258  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 280
Target Start/End: Original strand, 5073024 - 5073127
Alignment:
Q  175 aaaatgttggatatatataagagaggtgacccgtatacctaatacattaaggttttgggtggagatatggtgtctccctctcttgtggccttggaacatt 274  Q
    ||||||||||||||  |||||||||| | | | ||||| |||| | |||||||||||||||||||| ||  ||||||||||||||||| | |||| ||||    
T  5073024 aaaatgttggatat--ataagagaggcgtctcatatacgtaatgccttaaggttttgggtggagatgtgtcgtctccctctcttgtggtcctggagcatt 5073121  T
Q  275 ttgccc 280  Q
    | ||||    
T  5073122 tagccc 5073127  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 239
Target Start/End: Original strand, 11806729 - 11806794
Alignment:
Q  174 taaaatgttggatatatataagagaggtgacccgtatacctaatacattaaggttttgggtggaga 239  Q
    ||||||||||  ||||||||||||||||||||| |||||||  | | |||||||||||||||||||    
T  11806729 taaaatgttgtgtatatataagagaggtgacccatataccttgtgccttaaggttttgggtggaga 11806794  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 249
Target Start/End: Complemental strand, 5981565 - 5981486
Alignment:
Q  168 aatggataaaatgttggatatatataagagaggtgacccgtatacctaatacattaaggttttgggtggagatatggtgtct 249  Q
    |||||| |||| ||||||||  ||||||||||| ||||| | ||||| || | ||||||||||||||||| || ||||||||    
T  5981565 aatggagaaaacgttggata--tataagagaggggacccatgtacctgatgccttaaggttttgggtggaaatgtggtgtct 5981486  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 248
Target Start/End: Original strand, 12156399 - 12156439
Alignment:
Q  208 tatacctaatacattaaggttttgggtggagatatggtgtc 248  Q
    |||||||||||| ||||||||| |||||||||| |||||||    
T  12156399 tatacctaatacgttaaggtttagggtggagatgtggtgtc 12156439  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 240
Target Start/End: Complemental strand, 11776453 - 11776400
Alignment:
Q  187 atatataagagaggtgacccgtatacctaatacattaaggttttgggtggagat 240  Q
    |||||||||||||| ||||| ||||| |||||| ||||||||||||||||||||    
T  11776453 atatataagagaggggacccatatacataataccttaaggttttgggtggagat 11776400  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 187 - 259
Target Start/End: Complemental strand, 33730158 - 33730086
Alignment:
Q  187 atatataagagaggtgacccgtatacctaatacattaaggttttgggtggagatatggtgtctccctctcttg 259  Q
    ||||| |||||||||||||| || | ||||| |||||||||||||| ||||||| ||||| |||| |||||||    
T  33730158 atataaaagagaggtgacccatagagctaatgcattaaggttttggatggagatgtggtgcctccatctcttg 33730086  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 227 - 270
Target Start/End: Complemental strand, 33730456 - 33730413
Alignment:
Q  227 ttttgggtggagatatggtgtctccctctcttgtggccttggaa 270  Q
    |||||||||||||| ||| ||||||||||||||||| |||||||    
T  33730456 ttttgggtggagatgtggcgtctccctctcttgtggtcttggaa 33730413  T

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Target: scaffold0039 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 249
Target Start/End: Original strand, 29063 - 29137
Alignment:
Q  175 aaaatgttggatatatataagagaggtgacccgtatacctaatacattaaggttttgggtggagatatggtgtct 249  Q
    |||||||||||||||||||||||||| ||| | |||| || ||   ||||| |||||||||||||| ||||||||    
T  29063 aaaatgttggatatatataagagaggggactcatatatctgatgtcttaagattttgggtggagatgtggtgtct 29137  T

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