View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11260_high_22 (Length: 261)

Name: NF11260_high_22
Description: NF11260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11260_high_22
NF11260_high_22
[»] chr3 (8 HSPs)
chr3 (18-248)||(3198646-3198876)
chr3 (98-211)||(3200563-3200679)
chr3 (184-230)||(3311116-3311162)
chr3 (184-230)||(3322715-3322761)
chr3 (98-211)||(3357769-3357885)
chr3 (72-139)||(3221845-3221912)
chr3 (187-230)||(3304440-3304483)
chr3 (97-139)||(3280652-3280694)
[»] chr1 (3 HSPs)
chr1 (175-248)||(41947698-41947771)
chr1 (97-138)||(49386834-49386875)
chr1 (72-131)||(41947592-41947651)


Alignment Details
Target: chr3 (Bit Score: 171; Significance: 6e-92; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 18 - 248
Target Start/End: Original strand, 3198646 - 3198876
Alignment:
Q  18 gggataatgtgaaaaatgttttggagtaaggctatgagtccagaatggttgactctttgtaccacatttatgttatagtaatcaatcacatcttctatgc 117  Q
    ||||| ||||||||||| ||||||||||| ||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||    
T  3198646 gggatcatgtgaaaaatattttggagtaaagctatgagtccagaatggttgaccctttgtgccacattcatgttatagtaatcaatcacatcttctatgc 3198745  T
Q  118 gaaaagattcttctctgagctgtttggtccaagcttttacttctttattggcttctcctccttcttcagcagcctttgtgtcagcatccttgagcaaggc 217  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||  | |||||||||||||||||||| |||| ||||||||||||||||     
T  3198746 gaaaagattcttctctcagctgtttggtccaagcttttacttctttattggctcgttctccttcttcagcagcctttttgtctgcatccttgagcaaggt 3198845  T
Q  218 ttggatgctctcatattcattttttatctct 248  Q
    |||||||||||||  ||||||||||||||||    
T  3198846 ttggatgctctcaagttcattttttatctct 3198876  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 98 - 211
Target Start/End: Complemental strand, 3200679 - 3200563
Alignment:
Q  98 atcaatcacatcttctatgcgaaaagattcttctctgagctgtttggtccaagcttttacttctttattgg---cttctcctccttcttcagcagccttt 194  Q
    |||||||||||||||||||||||||||| ||||||| ||||| ||   ||||| ||| | | |||  ||||   || |||||||||| ||||||||||||    
T  3200679 atcaatcacatcttctatgcgaaaagatgcttctcttagctgcttcacccaagttttgattccttcgttggctcctcctcctccttcatcagcagccttt 3200580  T
Q  195 gtgtcagcatccttgag 211  Q
    ||||| |||||||||||    
T  3200579 gtgtctgcatccttgag 3200563  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 230
Target Start/End: Original strand, 3311116 - 3311162
Alignment:
Q  184 cagcagcctttgtgtcagcatccttgagcaaggcttggatgctctca 230  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||    
T  3311116 cagcggcctttgtgtcagcatccttgaggaaggcttggatgctctca 3311162  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 230
Target Start/End: Original strand, 3322715 - 3322761
Alignment:
Q  184 cagcagcctttgtgtcagcatccttgagcaaggcttggatgctctca 230  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||    
T  3322715 cagcggcctttgtgtcagcatccttgaggaaggcttggatgctctca 3322761  T

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Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 211
Target Start/End: Original strand, 3357769 - 3357885
Alignment:
Q  98 atcaatcacatcttctatgcgaaaagattcttctctgagctgtttggtccaagcttttacttctttattgg---cttctcctccttcttcagcagccttt 194  Q
    |||||||||||||||||||||||||||| ||||||| ||||| ||   ||||| ||| | | |||  ||||   || |||||||||| ||||||||| ||    
T  3357769 atcaatcacatcttctatgcgaaaagatgcttctcttagctgcttcacccaagttttgattccttcgttggctcctcctcctccttcatcagcagccctt 3357868  T
Q  195 gtgtcagcatccttgag 211  Q
    ||||| |||||||||||    
T  3357869 gtgtctgcatccttgag 3357885  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 72 - 139
Target Start/End: Original strand, 3221845 - 3221912
Alignment:
Q  72 ctttgtaccacatttatgttatagtaatcaatcacatcttctatgcgaaaagattcttctctgagctg 139  Q
    |||||||||| ||  ||| ||||  |||||||||||||||||||| |||||||| ||||||| |||||    
T  3221845 ctttgtaccaaatacatgctataacaatcaatcacatcttctatgtgaaaagatgcttctcttagctg 3221912  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 3304440 - 3304483
Alignment:
Q  187 cagcctttgtgtcagcatccttgagcaaggcttggatgctctca 230  Q
    |||||||| |||||||||||||||| |||| |||||||||||||    
T  3304440 cagcctttctgtcagcatccttgaggaaggattggatgctctca 3304483  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 139
Target Start/End: Original strand, 3280652 - 3280694
Alignment:
Q  97 aatcaatcacatcttctatgcgaaaagattcttctctgagctg 139  Q
    ||||||||||||||||||| ||||||||| ||||||| |||||    
T  3280652 aatcaatcacatcttctatacgaaaagatgcttctcttagctg 3280694  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 248
Target Start/End: Original strand, 41947698 - 41947771
Alignment:
Q  175 ctccttcttcagcagcctttgtgtcagcatccttgagcaaggcttggatgctctcatattcattttttatctct 248  Q
    ||||||| ||| ||||| ||||||| ||||||||||| ||||||| ||||||||||  ||||| ||| ||||||    
T  41947698 ctccttcatcaacagcccttgtgtctgcatccttgagaaaggctttgatgctctcaagttcatgtttgatctct 41947771  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 97 - 138
Target Start/End: Original strand, 49386834 - 49386875
Alignment:
Q  97 aatcaatcacatcttctatgcgaaaagattcttctctgagct 138  Q
    ||||||||||||||||||||||||||||| ||||||| ||||    
T  49386834 aatcaatcacatcttctatgcgaaaagatgcttctctaagct 49386875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 72 - 131
Target Start/End: Original strand, 41947592 - 41947651
Alignment:
Q  72 ctttgtaccacatttatgttatagtaatcaatcacatcttctatgcgaaaagattcttct 131  Q
    |||||||||| ||  ||||||||| ||||||||||| ||| ||||||||||||| |||||    
T  41947592 ctttgtaccaaatacatgttatagcaatcaatcacaacttttatgcgaaaagatgcttct 41947651  T

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