View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11260_high_24 (Length: 250)

Name: NF11260_high_24
Description: NF11260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11260_high_24
NF11260_high_24
[»] chr5 (9 HSPs)
chr5 (11-62)||(2735811-2735862)
chr5 (76-123)||(2735847-2735894)
chr5 (191-250)||(8442176-8442235)
chr5 (191-250)||(43153055-43153114)
chr5 (191-247)||(9957199-9957255)
chr5 (191-250)||(7080547-7080606)
chr5 (191-250)||(12203164-12203223)
chr5 (193-250)||(35595981-35596038)
chr5 (191-224)||(38919869-38919902)
[»] chr4 (10 HSPs)
chr4 (191-250)||(7795031-7795090)
chr4 (191-247)||(31413784-31413840)
chr4 (191-250)||(1868888-1868947)
chr4 (191-250)||(36871163-36871222)
chr4 (191-250)||(24310516-24310575)
chr4 (207-250)||(29577431-29577474)
chr4 (191-250)||(46791986-46792045)
chr4 (207-250)||(51107436-51107479)
chr4 (191-250)||(54848155-54848214)
chr4 (194-250)||(9095957-9096013)
[»] chr3 (5 HSPs)
chr3 (194-250)||(43149338-43149394)
chr3 (191-250)||(35368628-35368687)
chr3 (191-250)||(29057665-29057724)
chr3 (191-250)||(29846886-29846945)
chr3 (191-250)||(50745566-50745625)
[»] chr1 (7 HSPs)
chr1 (191-250)||(50460707-50460766)
chr1 (194-250)||(35030757-35030813)
chr1 (191-250)||(11121498-11121557)
chr1 (191-250)||(30414881-30414940)
chr1 (207-249)||(14002738-14002780)
chr1 (209-250)||(8577497-8577538)
chr1 (210-250)||(48256943-48256983)
[»] chr7 (5 HSPs)
chr7 (191-250)||(24380716-24380775)
chr7 (191-250)||(25272608-25272667)
chr7 (191-250)||(27866532-27866591)
chr7 (191-250)||(33465034-33465093)
chr7 (191-249)||(38547286-38547344)
[»] chr6 (4 HSPs)
chr6 (207-250)||(7304120-7304163)
chr6 (191-250)||(9395332-9395391)
chr6 (191-250)||(16121169-16121228)
chr6 (193-250)||(17442841-17442898)
[»] chr2 (3 HSPs)
chr2 (191-250)||(11828815-11828874)
chr2 (191-250)||(45202127-45202186)
chr2 (191-250)||(40115532-40115591)
[»] chr8 (6 HSPs)
chr8 (191-247)||(41776192-41776248)
chr8 (191-250)||(6243051-6243110)
chr8 (191-250)||(13924028-13924087)
chr8 (191-250)||(14233639-14233698)
chr8 (191-250)||(25430663-25430722)
chr8 (209-250)||(27300381-27300422)
[»] scaffold0009 (1 HSPs)
scaffold0009 (207-250)||(5065-5108)


Alignment Details
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 62
Target Start/End: Original strand, 2735811 - 2735862
Alignment:
Q  11 cacagatcatcattaattgataatgttaaatatacatccaatgaggctatct 62  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  2735811 cacagatcatcattaattgataatgttaaatatacatccaatgagtctatct 2735862  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 76 - 123
Target Start/End: Original strand, 2735847 - 2735894
Alignment:
Q  76 tccaatgagtctatctgacacattgtgaaagagtaaatatacatccaa 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2735847 tccaatgagtctatctgacacattgtgaaagagtaaatatacatccaa 2735894  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 250
Target Start/End: Original strand, 8442176 - 8442235
Alignment:
Q  191 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttat 250  Q
    |||||||||||||  ||||||||||||||||||| || |||||| |||||||||| ||||    
T  8442176 tgatatttgtacaattatttttgtacaactttctctctcatattcacattatctttttat 8442235  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 250
Target Start/End: Complemental strand, 43153114 - 43153055
Alignment:
Q  191 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttat 250  Q
    ||||||||||||| | |||||||||||||||||| || |||||| |||||||||| ||||    
T  43153114 tgatatttgtacaacaatttttgtacaactttctctctcatattcacattatctttttat 43153055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 247
Target Start/End: Complemental strand, 9957255 - 9957199
Alignment:
Q  191 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttct 247  Q
    |||||||||||||  |||||||||| ||||||||||| |||| | ||||||||||||    
T  9957255 tgatatttgtacaattatttttgtagaactttctttctcatactcacattatcttct 9957199  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 250
Target Start/End: Original strand, 7080547 - 7080606
Alignment:
Q  191 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttat 250  Q
    |||||||||||||   |||||||||||||||||| || |||| | |||||||||||||||    
T  7080547 tgatatttgtacaatcatttttgtacaactttctctctcatactcacattatcttcttat 7080606  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 250
Target Start/End: Original strand, 12203164 - 12203223
Alignment:
Q  191 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttat 250  Q
    ||||||||||||| | |||||||||||||||||| || |||  | |||||||||||||||    
T  12203164 tgatatttgtacaaccatttttgtacaactttctctctcatgctcacattatcttcttat 12203223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 250
Target Start/End: Complemental strand, 35596038 - 35595981
Alignment:
Q  193 atatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttat 250  Q
    ||||||||||| | ||||||||||||||||||||  |||||| | ||| |||||||||    
T  35596038 atatttgtacaaccatttttgtacaactttctttatcatattcatattttcttcttat 35595981  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 224
Target Start/End: Original strand, 38919869 - 38919902
Alignment:
Q  191 tgatatttgtacagctatttttgtacaactttct 224  Q
    ||||||||||||| ||||||||||||||||||||    
T  38919869 tgatatttgtacaactatttttgtacaactttct 38919902  T

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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 191 - 250
Target Start/End: Original strand, 7795031 - 7795090
Alignment:
Q  191 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttat 250  Q
    ||||||||||||| | ||||||||||||||||||||| |||| |||||||||||||||||    
T  7795031 tgatatttgtacaaccatttttgtacaactttctttctcatacttacattatcttcttat 7795090  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 191 - 247
Target Start/End: Complemental strand, 31413840 - 31413784
Alignment:
Q  191 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttct 247  Q
    ||||||||||||| |||||||||||||||||||| || |||| | ||||||||||||    
T  31413840 tgatatttgtacaactatttttgtacaactttctctctcatactgacattatcttct 31413784  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 250
Target Start/End: Complemental strand, 1868947 - 1868888
Alignment:
Q  191 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttat 250  Q
    ||||||||||||| | |||||||||||||||||| || |||| | |||||||||||||||    
T  1868947 tgatatttgtacaaccatttttgtacaactttctatctcatactcacattatcttcttat 1868888  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 250
Target Start/End: Complemental strand, 36871222 - 36871163
Alignment:
Q  191 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttat 250  Q
    ||||||||||||| |||||||||||||||||||| ||  |||||  ||||||||||||||    
T  36871222 tgatatttgtacaactatttttgtacaactttctctcttatattcgcattatcttcttat 36871163  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 250
Target Start/End: Complemental strand, 24310575 - 24310516
Alignment:
Q  191 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttat 250  Q
    ||||||||||||| | |||||||||||||||||| || |||| | ||||| |||||||||    
T  24310575 tgatatttgtacaaccatttttgtacaactttctctctcatactcacattttcttcttat 24310516  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 207 - 250
Target Start/End: Complemental strand, 29577474 - 29577431
Alignment:
Q  207 atttttgtacaactttctttcacatatttacattatcttcttat 250  Q
    ||||||||||||||||||||| |||| | |||||||||||||||    
T  29577474 atttttgtacaactttctttctcatactcacattatcttcttat 29577431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 250
Target Start/End: Complemental strand, 46792045 - 46791986
Alignment:
Q  191 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttat 250  Q
    |||||||||| || | |||||||||||| |||||||| |||| | |||||||||||||||    
T  46792045 tgatatttgtgcaacaatttttgtacaattttctttctcatactcacattatcttcttat 46791986  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 207 - 250
Target Start/End: Complemental strand, 51107479 - 51107436
Alignment:
Q  207 atttttgtacaactttctttcacatatttacattatcttcttat 250  Q
    ||||||| |||||||||| || ||||||||||||||||||||||    
T  51107479 atttttgcacaactttctctctcatatttacattatcttcttat 51107436  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 250
Target Start/End: Original strand, 54848155 - 54848214
Alignment:
Q  191 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttat 250  Q
    ||||||||||||| | ||||||||||||| |||| || |||||| ||||||| |||||||    
T  54848155 tgatatttgtacaaccatttttgtacaaccttctctctcatattcacattattttcttat 54848214  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 250
Target Start/End: Original strand, 9095957 - 9096013
Alignment:
Q  194 tatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttat 250  Q
    ||||||||||  ||||||||||||| ||||| || |||| | |||||||||||||||    
T  9095957 tatttgtacaattatttttgtacaattttctctctcatactcacattatcttcttat 9096013  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 194 - 250
Target Start/End: Complemental strand, 43149394 - 43149338
Alignment:
Q  194 tatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttat 250  Q
    |||||||||| ||||||||||||||||||||||| |||| | |||||||||||||||    
T  43149394 tatttgtacaactatttttgtacaactttctttctcatactcacattatcttcttat 43149338  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 191 - 250
Target Start/End: Original strand, 35368628 - 35368687
Alignment:
Q  191 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttat 250  Q
    ||||||||||||| |||||||||||||||||||| || |||| | |||||||||||||||    
T  35368628 tgatatttgtacaactatttttgtacaactttctctctcatactcacattatcttcttat 35368687  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 250
Target Start/End: Original strand, 29057665 - 29057724
Alignment:
Q  191 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttat 250  Q
    ||||||||||||| | |||||||||||||||||| || |||| | |||||||||||||||    
T  29057665 tgatatttgtacaaccatttttgtacaactttctctctcatactcacattatcttcttat 29057724  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 250
Target Start/End: Complemental strand, 29846945 - 29846886
Alignment:
Q  191 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttat 250  Q
    ||||||||||||| | |||||||||||||||||| || |||| | ||||||| |||||||    
T  29846945 tgatatttgtacaaccatttttgtacaactttctctctcatactcacattatattcttat 29846886  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 250
Target Start/End: Original strand, 50745566 - 50745625
Alignment:
Q  191 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttat 250  Q
    |||||||||||||   |||||||||||||||||| || |||| | |||||||||||||||    
T  50745566 tgatatttgtacaatcatttttgtacaactttctctctcatactcacattatcttcttat 50745625  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 191 - 250
Target Start/End: Complemental strand, 50460766 - 50460707
Alignment:
Q  191 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttat 250  Q
    ||||||||||||| | ||||||||||||||||||||| |||| | |||||||||||||||    
T  50460766 tgatatttgtacaaccatttttgtacaactttctttctcatactcacattatcttcttat 50460707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 194 - 250
Target Start/End: Complemental strand, 35030813 - 35030757
Alignment:
Q  194 tatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttat 250  Q
    |||||||||| | |||||||||||||||||| || |||| |||||||||||||||||    
T  35030813 tatttgtacaaccatttttgtacaactttctctctcatacttacattatcttcttat 35030757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 250
Target Start/End: Original strand, 11121498 - 11121557
Alignment:
Q  191 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttat 250  Q
    ||||||||||||| | | |||||||||||||||| || |||| | |||||||||||||||    
T  11121498 tgatatttgtacaacaacttttgtacaactttctctctcatactcacattatcttcttat 11121557  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 250
Target Start/End: Original strand, 30414881 - 30414940
Alignment:
Q  191 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttat 250  Q
    ||||||||||||| | ||||||||||||| |||| || |||| | |||||||||||||||    
T  30414881 tgatatttgtacaaccatttttgtacaaccttctctctcatactcacattatcttcttat 30414940  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 249
Target Start/End: Complemental strand, 14002780 - 14002738
Alignment:
Q  207 atttttgtacaactttctttcacatatttacattatcttctta 249  Q
    |||||| |||||||||||||| |||||||||||||| ||||||    
T  14002780 atttttatacaactttctttctcatatttacattatattctta 14002738  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 209 - 250
Target Start/End: Complemental strand, 8577538 - 8577497
Alignment:
Q  209 ttttgtacaactttctttcacatatttacattatcttcttat 250  Q
    ||||||||||| |||| || ||||||||||||||||||||||    
T  8577538 ttttgtacaaccttctctctcatatttacattatcttcttat 8577497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 250
Target Start/End: Original strand, 48256943 - 48256983
Alignment:
Q  210 tttgtacaactttctttcacatatttacattatcttcttat 250  Q
    ||||||||||||||| || |||||| |||||||||||||||    
T  48256943 tttgtacaactttctctctcatattcacattatcttcttat 48256983  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 250
Target Start/End: Complemental strand, 24380775 - 24380716
Alignment:
Q  191 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttat 250  Q
    ||||||||||||| | |||||| |||||||||||||| |||| | |||||||||||||||    
T  24380775 tgatatttgtacaaccatttttatacaactttctttctcatactcacattatcttcttat 24380716  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 250
Target Start/End: Original strand, 25272608 - 25272667
Alignment:
Q  191 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttat 250  Q
    ||||||||||||| | |||||||||||||||||| ||| ||| | |||||||||||||||    
T  25272608 tgatatttgtacaaccatttttgtacaactttctctcatatactcacattatcttcttat 25272667  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 250
Target Start/End: Complemental strand, 27866591 - 27866532
Alignment:
Q  191 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttat 250  Q
    ||||||||||||| | |||||||||||||||| | || |||| | |||||||||||||||    
T  27866591 tgatatttgtacaaccatttttgtacaactttatctctcatactcacattatcttcttat 27866532  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 250
Target Start/End: Complemental strand, 33465093 - 33465034
Alignment:
Q  191 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttat 250  Q
    ||||||||||||| | |||||||||||| ||||| || |||| | |||||||||||||||    
T  33465093 tgatatttgtacaaccatttttgtacaattttctctctcatactcacattatcttcttat 33465034  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 249
Target Start/End: Complemental strand, 38547344 - 38547286
Alignment:
Q  191 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttctta 249  Q
    ||||||||||||| ||||||||  ||||||||||||| |||| | ||||||| ||||||    
T  38547344 tgatatttgtacaactattttttgacaactttctttctcatactcacattatattctta 38547286  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 207 - 250
Target Start/End: Complemental strand, 7304163 - 7304120
Alignment:
Q  207 atttttgtacaactttctttcacatatttacattatcttcttat 250  Q
    |||||||||||||||||| || ||||||||||||||||||||||    
T  7304163 atttttgtacaactttctctctcatatttacattatcttcttat 7304120  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 250
Target Start/End: Complemental strand, 9395391 - 9395332
Alignment:
Q  191 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttat 250  Q
    ||||||||||||| |||||||||||||||||||| |  |||| | |||||||||||||||    
T  9395391 tgatatttgtacaactatttttgtacaactttctctttcatactcacattatcttcttat 9395332  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 250
Target Start/End: Original strand, 16121169 - 16121228
Alignment:
Q  191 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttat 250  Q
    ||||||||||||| | |||||||||||||||||| |  |||| |||||||||||||||||    
T  16121169 tgatatttgtacaaccatttttgtacaactttctctttcatacttacattatcttcttat 16121228  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 250
Target Start/End: Original strand, 17442841 - 17442898
Alignment:
Q  193 atatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttat 250  Q
    ||||||||||| | |||||||||||||||||| ||  ||| | |||||||||||||||    
T  17442841 atatttgtacaaccatttttgtacaactttctctcttatactcacattatcttcttat 17442898  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 250
Target Start/End: Complemental strand, 11828874 - 11828815
Alignment:
Q  191 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttat 250  Q
    ||||||||||||| | |||||||||||||||||| || |||||| || ||||||||||||    
T  11828874 tgatatttgtacaaccatttttgtacaactttctctctcatattcacgttatcttcttat 11828815  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 250
Target Start/End: Complemental strand, 45202186 - 45202127
Alignment:
Q  191 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttat 250  Q
    ||||||||||||| | |||||| ||||||||||| || |||||| |||||||||||||||    
T  45202186 tgatatttgtacaaccatttttttacaactttctctctcatattcacattatcttcttat 45202127  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 250
Target Start/End: Original strand, 40115532 - 40115591
Alignment:
Q  191 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttat 250  Q
    ||||||||||||| ||||||||||| || ||||| || |||| | |||||||||||||||    
T  40115532 tgatatttgtacaactatttttgtataattttctctctcatactaacattatcttcttat 40115591  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 247
Target Start/End: Original strand, 41776192 - 41776248
Alignment:
Q  191 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttct 247  Q
    ||||||||||||| |||||||||||||||||||| || |||| | |||| |||||||    
T  41776192 tgatatttgtacaactatttttgtacaactttctctctcatactcacatcatcttct 41776248  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 250
Target Start/End: Original strand, 6243051 - 6243110
Alignment:
Q  191 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttat 250  Q
    |||||||||||||   |||||||||||||||||| || |||| | |||||||||||||||    
T  6243051 tgatatttgtacaatcatttttgtacaactttctctctcatactcacattatcttcttat 6243110  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 250
Target Start/End: Original strand, 13924028 - 13924087
Alignment:
Q  191 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttat 250  Q
    ||||||||||||| | |||||||||||||||||| || |||  | |||||||||||||||    
T  13924028 tgatatttgtacaaccatttttgtacaactttctctctcatgctcacattatcttcttat 13924087  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 250
Target Start/End: Complemental strand, 14233698 - 14233639
Alignment:
Q  191 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttat 250  Q
    ||||||||||||| |||||||| ||||||||||| || |||| |  ||||||||||||||    
T  14233698 tgatatttgtacaactatttttttacaactttctctctcatactcgcattatcttcttat 14233639  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 250
Target Start/End: Original strand, 25430663 - 25430722
Alignment:
Q  191 tgatatttgtacagctatttttgtacaactttctttcacatatttacattatcttcttat 250  Q
    ||||||||||||| | ||||||||||||| |||| || |||| | |||||||||||||||    
T  25430663 tgatatttgtacaaccatttttgtacaaccttctatctcatactcacattatcttcttat 25430722  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 209 - 250
Target Start/End: Original strand, 27300381 - 27300422
Alignment:
Q  209 ttttgtacaactttctttcacatatttacattatcttcttat 250  Q
    |||||||||||||||| || |||||| |||||||||||||||    
T  27300381 ttttgtacaactttctctctcatattcacattatcttcttat 27300422  T

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Target: scaffold0009 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 207 - 250
Target Start/End: Complemental strand, 5108 - 5065
Alignment:
Q  207 atttttgtacaactttctttcacatatttacattatcttcttat 250  Q
    |||||||||||||||||| || |||||||| |||||||||||||    
T  5108 atttttgtacaactttctctctcatatttatattatcttcttat 5065  T

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