View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11260_high_3 (Length: 563)
Name: NF11260_high_3
Description: NF11260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11260_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 439
Target Start/End: Original strand, 44636074 - 44636493
Alignment:
| Q |
1 |
ttgcaagttttgcataaaaatatggggaaaaccccgtctatttgcagcagtaatctgattatttgtttgctccaatccatatatacggtaataagatgga |
100 |
Q |
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| T |
44636074 |
ttgcaagttttgcataaaaatatggggaaaaccccgtctatttgtagcagtaatctgattatttgtttgctccaatccatatatacggtaataagatgga |
44636173 |
T |
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| Q |
101 |
gtatcatttcatgtgcatagcaaagtataactataacgtgatggatctcatgcaaaatagttaacatcaaataataatacttatgtaactacatagatac |
200 |
Q |
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| T |
44636174 |
gtatcatttcatgtgcatagcaaagtataactataacgtgatggatctcatgcaaaatagttaacatcaaataataatacttatgtaactacatagatac |
44636273 |
T |
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| Q |
201 |
atatgatggcatacacatgagaatttcatgaaatgatgtgtctcacagcacacatgaagtgttgtaactgcaacatgagcagcactgtcaatagaaaaca |
300 |
Q |
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| T |
44636274 |
atatgatggcatacac-------------------atgtgtctcacagcacacatgaagtgttgtaactgcaacatgagcagcactgtcaatagaaaaca |
44636354 |
T |
|
| Q |
301 |
agttagacaacacaactcaacaatcatgaaaactagtaatttcaaaatgactatcttagtgataaataaataactagggttaagatgaagatgaagatnn |
400 |
Q |
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| T |
44636355 |
agttagacaacacaactcaacaatcatgaaaactagtaatttcaaaatgactatcttagtgataaataaataactagggttaagatgaagatgaagataa |
44636454 |
T |
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| Q |
401 |
nnnnngagtcgtaatatttgtttttctagtagcatgcta |
439 |
Q |
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| T |
44636455 |
aaaaagagtcgtaatatttgtttttctagtagcatgcta |
44636493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 503 - 548
Target Start/End: Original strand, 44636557 - 44636602
Alignment:
| Q |
503 |
gaatttgtttaatcattcccagttcaaacgtattcttgttgttctt |
548 |
Q |
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| T |
44636557 |
gaatttgtttaatcattcccagttcaaacgtattcttgttgttctt |
44636602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 268 - 352
Target Start/End: Complemental strand, 4142276 - 4142191
Alignment:
| Q |
268 |
ctgcaacatgagcagcactgtca-atagaaaacaagttagacaacacaactcaacaatcatgaaaactagtaatttcaaaatgact |
352 |
Q |
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| T |
4142276 |
ctgcaacacgagcagcactgtcatatagaaaacaagttaaacaacacaacctaacaatcatgaaaactggtaatgtcaaaatgact |
4142191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 308 - 392
Target Start/End: Complemental strand, 1882440 - 1882356
Alignment:
| Q |
308 |
caacacaactcaacaatcatgaaaactagtaatttcaaaatgactatc-ttagtgataaataaataactagggttaagatgaagat |
392 |
Q |
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| T |
1882440 |
caacacaactcaacaatcatgaaaaat-gtaatttcaaaatgactatcatcagtcataaataaataactatagttaagattaagat |
1882356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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