View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11260_low_10 (Length: 399)
Name: NF11260_low_10
Description: NF11260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11260_low_10 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 17 - 388
Target Start/End: Original strand, 8733750 - 8734121
Alignment:
| Q |
17 |
cttgcatatccatcttttttattgcagctttctgcaataagcaatatgaagaacnnnnnnnnnnnnnnnnntcaagttttggcaacaaatttttgaacaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
8733750 |
cttgcatatccatcttttttattgcagctttctgcaataagcaatatgaagaacaaaaaaaggaaaaaaaatcaagttttggcaacaaatttttgaacaa |
8733849 |
T |
|
| Q |
117 |
tgttttggcaacaaattgaattcccatttcttgcaagagatctgttttagattgttatcatcaaacttggatgaaattgaatccaatgctagagataagt |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8733850 |
tgttttggcaacaaattgaattcccatttcttgcaagagatctattttagattgttatcatcaaacttggatgaaattgaatccaatgctagagataagt |
8733949 |
T |
|
| Q |
217 |
aannnnnnnaagcttaaactaaatcaaatattttgtttgctagacaatggtagttaaatagtagtgaactaaagctccaaaatgttggaacaaattcctt |
316 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8733950 |
aatttttttaagcttaaactaaatcaaatattttgtttgctagacaatggtagttaaatagtagtgaactaaagctccaaaatgttggaacaaattcctt |
8734049 |
T |
|
| Q |
317 |
cttgttttcaaataagatcaatttacatatgctacctgcatgaaacaattcagctcaataactgtgtttctt |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
8734050 |
cttgttttcaaataagatcaatttacatatgctacttgcatgaaacaattcagctcaataactgtgtttctt |
8734121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University