View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11260_low_13 (Length: 364)
Name: NF11260_low_13
Description: NF11260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11260_low_13 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 18 - 335
Target Start/End: Original strand, 47680700 - 47681013
Alignment:
| Q |
18 |
gtgcgaaccctacaaaaactctcaagtaagtagaaattgagtaagcataagtaattgataaaggatatatataattgatgaattatatcagtaaactatc |
117 |
Q |
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|||||||||||| | |||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
47680700 |
gtgcgaaccctatagaaactctcaagtaatttgaaattgagtaagcataagtaattgataaaggatat----aattgatgaattatatcagtaaactatc |
47680795 |
T |
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| Q |
118 |
aaaacgacggttaaataggaacaaaactcgtactcaaaggacacttaaaatgaaacgaatgaggtattgtgtgaatctacatgatcgcaatcattcttgt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
47680796 |
aaaacgacggttaaataggaacaaaactcgtactcaaaggacacttaaaaagaaacgaatgaggtattgtgtgaatctacatgaaagcaatcattcttgt |
47680895 |
T |
|
| Q |
218 |
atttcttgcataatgccttttggacattgttatgatgagtatatcttaaattattgagaaagtactaaaacacaagacgatttttgggaagacttagacc |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
47680896 |
atttcttgcataatgccttttggacattgttatgatgagtatagcttaaattattgagaaagtactacaacaaaagacgatttttgggaagacttagacc |
47680995 |
T |
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| Q |
318 |
tatgttctctcattgatg |
335 |
Q |
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| T |
47680996 |
tatgttctctcattgatg |
47681013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 143
Target Start/End: Original strand, 7259788 - 7259822
Alignment:
| Q |
109 |
taaactatcaaaacgacggttaaataggaacaaaa |
143 |
Q |
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| T |
7259788 |
taaaatatcaaaacgacggttaaataggaacaaaa |
7259822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 139
Target Start/End: Original strand, 54675258 - 54675310
Alignment:
| Q |
87 |
tataattgatgaattatatcagtaaactatcaaaacgacggttaaataggaac |
139 |
Q |
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| T |
54675258 |
tataattgataaattgtatccttaaaatatcaaaatgacggttaaataggaac |
54675310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 139
Target Start/End: Original strand, 272454 - 272506
Alignment:
| Q |
87 |
tataattgatgaattatatcagtaaactatcaaaacgacggttaaataggaac |
139 |
Q |
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| T |
272454 |
tataattgataaattgtaccattaaaatatcaaaacgacagttaaataggaac |
272506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 139
Target Start/End: Original strand, 41411538 - 41411590
Alignment:
| Q |
87 |
tataattgatgaattatatcagtaaactatcaaaacgacggttaaataggaac |
139 |
Q |
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| T |
41411538 |
tataattgataaattgtatccttaaaatatcaaaatgacggttaaataggaac |
41411590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 167
Target Start/End: Original strand, 1719950 - 1720033
Alignment:
| Q |
86 |
atataattgatgaattatatcagtaaactatcaaaacgacggttaaataggaaca--aaactcgtactcaaaggacacttaaaa |
167 |
Q |
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| T |
1719950 |
atataattgataaattatacaaataaactatcaaaacaacaattaaataggaacaatatattcgtactcaaacgaaacttaaaa |
1720033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 143
Target Start/End: Complemental strand, 37269458 - 37269402
Alignment:
| Q |
87 |
tataattgatgaattatatcagtaaactatcaaaacgacggttaaataggaacaaaa |
143 |
Q |
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|||||||||| ||| |||| |||| |||||||||||| ||||||||||||||||| |
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| T |
37269458 |
tataattgatcaatcgtatccttaaaatatcaaaacgacagttaaataggaacaaaa |
37269402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 408567 - 408615
Alignment:
| Q |
87 |
tataattgatgaattatatcagtaaactatcaaaacgacggttaaatag |
135 |
Q |
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| T |
408567 |
tataattgataaattgtatccataaaatatcaaaacgacggttaaatag |
408615 |
T |
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