View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11260_low_14 (Length: 362)
Name: NF11260_low_14
Description: NF11260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11260_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 2223779 - 2223452
Alignment:
| Q |
1 |
tgcttcaatcctttctctttcatccggaagatctggctgatcgatcatcattaaataataataattcagccaaaacaaagtgtttgatatggtaccaaaa |
100 |
Q |
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| T |
2223779 |
tgcttcaatcctttctctttcatccggaagatctggctgatcgatcatcattaaataataataatt-----------aattgttggatatggtaccaaaa |
2223691 |
T |
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| Q |
101 |
gcagttcaaataccataaatgtattttgcttcttaattnnnnnnnnnncaaactattattctagttaattacttgttagataagcaatatgcatatatac |
200 |
Q |
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| T |
2223690 |
gcagttcaaataccataaatgtattttgcttcttaattaaaaaaaaaacaaaccattattctatttaattacttgttagataagcaatatgcatatatac |
2223591 |
T |
|
| Q |
201 |
atgtatgatatatgactaactaaactaattaaccaattcggtgtacatattttctttatgagaattaagtgtacatgtttagtttgcttaattgtaagtt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
2223590 |
atgtatgatatatgactaactaaactaattaaccaattcggtgtacatattttctttatgagaattaagtgtacatgtttag-ttgcttaattgtaagtt |
2223492 |
T |
|
| Q |
301 |
tctttatatctcatgagtcaccattaattaaccatcacct |
340 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
2223491 |
tctttatatctcatgagtcaccattaattaaccatcacct |
2223452 |
T |
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