View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11260_low_15 (Length: 339)
Name: NF11260_low_15
Description: NF11260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11260_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 23 - 330
Target Start/End: Complemental strand, 42637938 - 42637631
Alignment:
| Q |
23 |
atactagtgtcaatggcattatttgtattgattataactctcaaggaagagttgtattgtggaatccagctaccaaggaaatcaaaatcattccttcaag |
122 |
Q |
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| T |
42637938 |
atactagtgtcaatggcattatttgtattgattataactctcaaggaagagttgtattgtggaatctagctaccaaggaaaacaaaatcattccttcaag |
42637839 |
T |
|
| Q |
123 |
tccttttgcttctcaaccttccttgaattatcttcatcttcatgggtttggttatgaccatattagaaataactataagttgattcgacatgcaataatt |
222 |
Q |
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| T |
42637838 |
tccttttgcttctcaaccttccttgaattatcttcatcttcatgggtttggttatgaccatattagaaataactataagttgattcgacatgcaataatt |
42637739 |
T |
|
| Q |
223 |
tatcctacaacatgcaacatgggaaaaaatacttcttattctttgtgggagatatactgtctaaaaagcaactcttggagaaagcttgatgtagatatgc |
322 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42637738 |
tatcctacaacatgcaacatgggaaaaaatactccttattctttgtgggagatatactgtctaaaaagcaactcttggagaaagcttgatgtagatatgc |
42637639 |
T |
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| Q |
323 |
cttcatct |
330 |
Q |
| |
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|||||||| |
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| T |
42637638 |
cttcatct |
42637631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 265 - 324
Target Start/End: Complemental strand, 42629991 - 42629932
Alignment:
| Q |
265 |
ttgtgggagatatactgtctaaaaagcaactcttggagaaagcttgatgtagatatgcct |
324 |
Q |
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| T |
42629991 |
ttgtgggagatatattgtcttaaaagcaactcttggagaaaacttgatataaatatgcct |
42629932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 263 - 323
Target Start/End: Complemental strand, 9575808 - 9575748
Alignment:
| Q |
263 |
ctttgtgggagatatactgtctaaaaagcaactcttggagaaagcttgatgtagatatgcc |
323 |
Q |
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|||||||||||||||| ||||||||||| |||| ||||||||| || ||| |||||||||| |
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| T |
9575808 |
ctttgtgggagatatattgtctaaaaagtaactattggagaaaactcgatatagatatgcc |
9575748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 322
Target Start/End: Complemental strand, 16487118 - 16487064
Alignment:
| Q |
268 |
tgggagatatactgtctaaaaagcaactcttggagaaagcttgatgtagatatgc |
322 |
Q |
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||||||||||| |||||| || ||||||||||||||| |||||||| ||||||| |
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| T |
16487118 |
tgggagatatatagtctaagaaacaactcttggagaaaacttgatgtcgatatgc |
16487064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 130
Target Start/End: Complemental strand, 42565612 - 42565554
Alignment:
| Q |
72 |
agttgtattgtggaatccagctaccaaggaaatcaaaatcattccttcaagtccttttg |
130 |
Q |
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||||||||||||||||||| ||||||||||| |||| ||||||| |||| ||||||| |
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| T |
42565612 |
agttgtattgtggaatccaactaccaaggaattcaatgccattcctccaagcccttttg |
42565554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 9576024 - 9575963
Alignment:
| Q |
70 |
agagttgtattgtggaatccagctaccaaggaaatcaaaatcattccttcaagtccttttgc |
131 |
Q |
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| T |
9576024 |
agagttgtattgtggaacccagctaccaatcaattcaaagtcactcctcctagtccttttgc |
9575963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 265 - 324
Target Start/End: Complemental strand, 3368212 - 3368153
Alignment:
| Q |
265 |
ttgtgggagatatactgtctaaaaagcaactcttggagaaagcttgatgtagatatgcct |
324 |
Q |
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|||||||||||||| | ||||||||| || ||||||||||| ||||| ||||||||||| |
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| T |
3368212 |
ttgtgggagatatattctctaaaaaggaattcttggagaaaagttgatatagatatgcct |
3368153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 187
Target Start/End: Complemental strand, 44938324 - 44938296
Alignment:
| Q |
159 |
tcttcatgggtttggttatgaccatatta |
187 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
44938324 |
tcttcatgggtttggttatgaccatatta |
44938296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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