View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11260_low_16 (Length: 329)
Name: NF11260_low_16
Description: NF11260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11260_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 6e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 15 - 310
Target Start/End: Original strand, 2223756 - 2224057
Alignment:
| Q |
15 |
gatgaaagagaaaggattgaagcagcaggtggaagagtgattgattggaatgggaatcgtgttttaggagtactcgcaacttccagatcaataggtacgt |
114 |
Q |
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| T |
2223756 |
gatgaaagagaaaggattgaagcagcaggtggaagagtgattgattggaatgggaatcgtgttttaggagtactcgcaacttccagatcaataggtacgt |
2223855 |
T |
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| Q |
115 |
acgtacttataataaaataatgatatacatgcat-----atgc----atg-catgatcaataggagttcttatctcacgatgagaactgcatacata--- |
201 |
Q |
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| T |
2223856 |
ac----ttataataaaat---gatatacatgcatgcacgatcctacgatatcatgatcaatag---ttcttatctcactatgagaactgcatgcatatgc |
2223945 |
T |
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| Q |
202 |
---tgcaggggatcactgcatgaagccatttgtgatatctcaaccagagatcaatgtatacggacgaacaaaatcagatgagtttgtagtggtggcaagt |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2223946 |
atatgcaggggatcactgcatgaagccatttgtgatatctcaaccagagatcaatgtatacggacgaacaaaatcagatgagtttgtagtggtggcaagt |
2224045 |
T |
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| Q |
299 |
gatggtctttgg |
310 |
Q |
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|||||||||||| |
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| T |
2224046 |
gatggtctttgg |
2224057 |
T |
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