View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11260_low_17 (Length: 314)

Name: NF11260_low_17
Description: NF11260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11260_low_17
NF11260_low_17
[»] chr5 (1 HSPs)
chr5 (1-295)||(25963690-25963984)


Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 25963690 - 25963984
Alignment:
Q  1 acagggttagatttgggtgaaaataaaatagagtttttaactgttacaaataatgtgtttttggaacagccaaagaaatctcattatgttactatcttca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  25963690 acagggttagatttgggtgaaaataaaatagagtttttaactgttacaaataatgtgtttttggaacagccaaagaaatctcattatgttactgtcttca 25963789  T
Q  101 tgagagtggtgttggatgcacaagaggagcatgtgattcaaaatgttgaacctgataagtgttatggttgggattggtttgaattggagaatttgccaaa 200  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25963790 tgagagtggtgttggatgcacaagaggagcatgtgattcagaatgttgaacctgataagtgttatggttgggattggtttgaattggagaatttgccaaa 25963889  T
Q  201 ccctttgttttggcctttggaaaagatgcttaaaggaggctttgatccttttccgagttgattctatgtattttaaatcattgacatgtagaagt 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||    
T  25963890 ccctttgttttggcctttggaaaagatgcttaaaggaggctttgatccttttctgaattgattatatgtattttaaatcattgacatgtagaagt 25963984  T

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