View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11260_low_19 (Length: 299)
Name: NF11260_low_19
Description: NF11260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11260_low_19 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 103 - 299
Target Start/End: Original strand, 41760725 - 41760918
Alignment:
| Q |
103 |
ttgtgtgctaagtactgaagagttaaacaaaaaatttgaagatttcattagaaagatgaaagaagatcttagaattgatgctagacggcatttaatcatg |
202 |
Q |
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| T |
41760725 |
ttgtgtgctaagtacagaagagttaaacaaaaaatttgaagatttcattagaaagatgaaagaagatcttagaattgatgctagacggcatttaatcatg |
41760824 |
T |
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| Q |
203 |
gtttgatttaagcaacaaaa-ccatgatcttctttcttttgatcatgcttctttcttgtattttagaaattagatgtatgcatccattaaattttgca |
299 |
Q |
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| T |
41760825 |
gtttgatttaagcaacaaaacccatgatcttctttcttttgatcatgc----ttcttgtattttagaaattagatgtatgcatccattaaattttgca |
41760918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 105 - 250
Target Start/End: Original strand, 41795516 - 41795663
Alignment:
| Q |
105 |
gtgtgctaagtactgaagagttaaacaaaaaatttgaagatttcattagaaagatgaaagaagatcttagaattgatgctagacggcatttaatcatggt |
204 |
Q |
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| T |
41795516 |
gtgtgttaagtacagaagagttaaacaaaaaattcgaagatttcattagaaagatgaaagaagatctaagaattgatgctagacggcatttagtcatggt |
41795615 |
T |
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| Q |
205 |
ttgatttaagcaacaa--aaccatgatcttctttcttttgatcatgct |
250 |
Q |
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| T |
41795616 |
ttgatttaagtaaacagcaaccatgatcttctttcttttgatcatgct |
41795663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 41760620 - 41760655
Alignment:
| Q |
1 |
gggagataaattgtcggaaattgattacattctaat |
36 |
Q |
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| T |
41760620 |
gggagataaattgtcggaaattgattacattctaat |
41760655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 271 - 299
Target Start/End: Original strand, 41795667 - 41795695
Alignment:
| Q |
271 |
ttagatgtatgcatccattaaattttgca |
299 |
Q |
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| T |
41795667 |
ttagatgtatgcatccattaaattttgca |
41795695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 107 - 162
Target Start/End: Original strand, 23507400 - 23507455
Alignment:
| Q |
107 |
gtgctaagtactgaagagttaaacaaaaaatttgaagatttcattagaaagatgaa |
162 |
Q |
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| T |
23507400 |
gtgctaagcactgaggagttgaacaaaaaatttgatgacttcattaaaaagatgaa |
23507455 |
T |
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