View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11260_low_21 (Length: 268)

Name: NF11260_low_21
Description: NF11260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11260_low_21
NF11260_low_21
[»] chr5 (2 HSPs)
chr5 (1-253)||(9816006-9816258)
chr5 (1-253)||(26353824-26354073)
[»] chr3 (9 HSPs)
chr3 (1-253)||(20015095-20015347)
chr3 (1-253)||(20007166-20007418)
chr3 (1-108)||(26648232-26648339)
chr3 (42-178)||(54116940-54117079)
chr3 (1-55)||(20035437-20035491)
chr3 (163-252)||(20046985-20047074)
chr3 (1-72)||(19850185-19850256)
chr3 (104-157)||(26654156-26654209)
chr3 (1-85)||(26654282-26654366)
[»] scaffold0038 (2 HSPs)
scaffold0038 (62-253)||(21184-21367)
scaffold0038 (153-223)||(19421-19491)
[»] chr6 (3 HSPs)
chr6 (62-253)||(28220686-28220869)
chr6 (153-223)||(28218923-28218993)
chr6 (62-182)||(28133788-28133901)
[»] chr1 (1 HSPs)
chr1 (62-106)||(1718291-1718335)
[»] scaffold0455 (1 HSPs)
scaffold0455 (62-182)||(11824-11937)
[»] chr7 (2 HSPs)
chr7 (161-250)||(12498123-12498212)
chr7 (161-250)||(12521988-12522077)


Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 9816258 - 9816006
Alignment:
Q  1 tttcaccttgagtctcagataaagaaactctgtcaccataaatccttgcttctttgctttgatttgcatcttcagaatcttcctccaaactccctattga 100  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  9816258 tttcaccttgagtctcagataaacagactctgtcaccataaatccttgcttctttgcttcgatttgcatcttcagaatcttcctccaaactccctattga 9816159  T
Q  101 aagttcaaaatcttctaaagaggatggagaacattggttgattaaatacttagattttaacacaggcttacaatcctcaatagacatggaaggagcatga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9816158 aagttcaaaatcttctaaagaggatggagaacattggttgattaaatacttagattttaacacaggcttacaatcctcaatagacatggaaggagcatga 9816059  T
Q  201 atatgttcatcagctatcatacaatcatcagcagaactttcagcaggaacatc 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9816058 atatgttcatcagctatcatacaatcatcagcagaactttcagcaggaacatc 9816006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 26353824 - 26354073
Alignment:
Q  1 tttcaccttgagtctcagataaagaaactctgtcaccataaatccttgcttctttgctttgatttgcatcttcagaatcttcctccaaactccctattga 100  Q
    ||||||||||||||||||||||| | |||||||||  || | |||||||||||||| |   ||||| ||||||| |||||||||||||||||||| || |    
T  26353824 tttcaccttgagtctcagataaacagactctgtca--atca-tccttgcttctttgttcccatttgaatcttcataatcttcctccaaactccctgttaa 26353920  T
Q  101 aagttcaaaatcttctaaagaggatggagaacattggttgattaaatacttagattttaacacaggcttacaatcctcaatagacatggaaggagcatga 200  Q
    || |||| ||| | |||||||||||| |||||| ||||||| |||||  || ||||| |||||| || | |||||||||| |||  |||||||||||  |    
T  26353921 aaattcagaatttgctaaagaggatgaagaacaatggttgactaaatttttcgatttcaacacatgcgtgcaatcctcaacagatctggaaggagcagca 26354020  T
Q  201 atatgttcatcagctatcatacaatcatcagcagaactttcagcaggaacatc 253  Q
    |||| || | ||||||||||||||||||  |||||| ||||||||||||||||    
T  26354021 atattttgagcagctatcatacaatcatgggcagaaatttcagcaggaacatc 26354073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 113; Significance: 3e-57; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 20015095 - 20015347
Alignment:
Q  1 tttcaccttgagtctcagataaagaaactctgtcaccataaatccttgcttctttgctttgatttgcatcttcagaatcttcctccaaactccctattga 100  Q
    ||||| ||||||||||||||||| | |||||||||| |   |||||| |||| |||||   ||||||||||||| ||| ||| ||||||||| |  ||||    
T  20015095 tttcagcttgagtctcagataaacagactctgtcactagtcatccttacttccttgctcccatttgcatcttcaaaatgttcttccaaactctcagttga 20015194  T
Q  101 aagttcaaaatcttctaaagaggatggagaacattggttgattaaatacttagattttaacacaggcttacaatcctcaatagacatggaaggagcatga 200  Q
    |||||||||||||  ||||||||||| |||||| ||||||| ||||| ||||||||| ||||||||||||| |||||||| ||||||||||||||||| |    
T  20015195 aagttcaaaatctgataaagaggatgaagaacaatggttgactaaatgcttagatttcaacacaggcttactatcctcaacagacatggaaggagcatca 20015294  T
Q  201 atatgttcatcagctatcatacaatcatcagcagaactttcagcaggaacatc 253  Q
    |||| |||||||||| || ||||| ||| |||||||||| |||||||| ||||    
T  20015295 atattttcatcagctgtcgtacaaacatgagcagaacttccagcaggagcatc 20015347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 20007166 - 20007418
Alignment:
Q  1 tttcaccttgagtctcagataaagaaactctgtcaccataaatccttgcttctttgctttgatttgcatcttcagaatcttcctccaaactccctattga 100  Q
    ||||||||||||||||||||||| | |  ||||||| | | || ||||||||||||||   ||||||||||||| ||||||| || |||||| | |||||    
T  20007166 tttcaccttgagtctcagataaacagagactgtcactagacattcttgcttctttgctcccatttgcatcttcataatcttcttcaaaactctccattga 20007265  T
Q  101 aagttcaaaatcttctaaagaggatggagaacattggttgattaaatacttagattttaacacaggcttacaatcctcaatagacatggaaggagcatga 200  Q
    |||||||||||||||||||||||||| |||||| |||||| |||||| ||| ||||| |||||||||||||| ||| ||| ||| | ||  ||||||| |    
T  20007266 aagttcaaaatcttctaaagaggatgaagaacaatggttggttaaatgcttggatttcaacacaggcttacagtccccaaaagatacggccggagcatca 20007365  T
Q  201 atatgttcatcagctatcatacaatcatcagcagaactttcagcaggaacatc 253  Q
    |||| | | ||||||  ||  ||||||| ||||| | ||||||||||||||||    
T  20007366 atatttccttcagcttccacgcaatcatgagcaggattttcagcaggaacatc 20007418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 26648339 - 26648232
Alignment:
Q  1 tttcaccttgagtctcagataaagaaactctgtcaccataaatccttgcttctttgctttgatttgcatcttcagaatcttcctccaaactccctattga 100  Q
    ||||||||||||||||||||||| | |||||||||  | | |||||||||| ||||||   |||||||||||||||||| |||||||||||  |||||||    
T  26648339 tttcaccttgagtctcagataaacagactctgtcattagacatccttgcttgtttgctcccatttgcatcttcagaatcatcctccaaactttctattga 26648240  T
Q  101 aagttcaa 108  Q
    ||||||||    
T  26648239 aagttcaa 26648232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 42 - 178
Target Start/End: Complemental strand, 54117079 - 54116940
Alignment:
Q  42 atccttgcttctttgctttgatttgcatcttcagaatcttcctccaaactccctattgaaagttcaaaatcttctaaa---gaggatggagaacattggt 138  Q
    ||||||||||||||| |    |||||||||||  ||||||||||||||||||||||||||| |||||||||| |  ||   ||||| | |||||  ||||    
T  54117079 atccttgcttctttgttcccgtttgcatcttcgaaatcttcctccaaactccctattgaaatttcaaaatctgcagaagaggaggacgaagaactatggt 54116980  T
Q  139 tgattaaatacttagattttaacacaggcttacaatcctc 178  Q
    ||||||||| ||| ||||| |||||| |||||||||||||    
T  54116979 tgattaaatgcttggatttcaacacatgcttacaatcctc 54116940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 20035437 - 20035491
Alignment:
Q  1 tttcaccttgagtctcagataaagaaactctgtcaccataaatccttgcttcttt 55  Q
    ||||||||||||||||||||||| ||||| |||||| | ||||||||||||||||    
T  20035437 tttcaccttgagtctcagataaacaaactttgtcactagaaatccttgcttcttt 20035491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 163 - 252
Target Start/End: Complemental strand, 20047074 - 20046985
Alignment:
Q  163 caggcttacaatcctcaatagacatggaaggagcatgaatatgttcatcagctatcatacaatcatcagcagaactttcagcaggaacat 252  Q
    |||| |||||||||||| |||| ||||||| ||||  ||||| |||| ||||| ||  ||||||||  |||||| |||||||||||||||    
T  20047074 caggattacaatcctcagtagatatggaagaagcaacaatattttcaacagctttcgcacaatcatgtgcagaattttcagcaggaacat 20046985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 19850256 - 19850185
Alignment:
Q  1 tttcaccttgagtctcagataaagaaactctgtcaccataaatccttgcttctttgctttgatttgcatctt 72  Q
    ||||||||||||||||||||||  | |||| ||||| | |||||||| ||| |||||| | |||||||||||    
T  19850256 tttcaccttgagtctcagataagcacactcggtcactacaaatcctttcttttttgctctcatttgcatctt 19850185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 157
Target Start/End: Complemental strand, 26654209 - 26654156
Alignment:
Q  104 ttcaaaatcttctaaagaggatggagaacattggttgattaaatacttagattt 157  Q
    |||| ||||| ||||||||| || |||||||||||| ||||||| |||||||||    
T  26654209 ttcataatctgctaaagaggctgaagaacattggttaattaaatgcttagattt 26654156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 26654366 - 26654282
Alignment:
Q  1 tttcaccttgagtctcagataaagaaactctgtcaccataaatccttgcttctttgctttgatttgcatcttcagaatcttcctc 85  Q
    ||||||||||||||||||||||| |  ||||||||  | |  ||| ||||||||| |||  ||||||||||||| |||| |||||    
T  26654366 tttcaccttgagtctcagataaaaaggctctgtcattagacttccatgcttcttttcttccatttgcatcttcaaaatcatcctc 26654282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 62 - 253
Target Start/End: Complemental strand, 21367 - 21184
Alignment:
Q  62 atttgcatcttcagaatcttcctccaaactccctattgaaagttcaaaatcttctaaagaggatggagaacattggttgattaaatacttagattttaac 161  Q
    ||||||||||||| ||||||||| ||||||   ||||||  | ||||| ||| ||||| | |||| |||||| |||  |||||||| ||||     |||     
T  21367 atttgcatcttcaaaatcttccttcaaactg--tattgattgctcaaactctgctaaatatgatgaagaacaatggacgattaaatgctta-----taaa 21275  T
Q  162 acaggcttacaatcctcaatagacatggaaggagcatgaatatgttcatcagctatcatacaatcatcagcagaactttcagcaggaacatc 253  Q
    ||| |||||||||||||| ||||| |||||| ||||||||||| |||||  ||||||||||||| || ||||||| |||||||| |||||||    
T  21274 acatgcttacaatcctca-tagacttggaagaagcatgaatattttcattggctatcatacaattatgagcagaattttcagcatgaacatc 21184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 223
Target Start/End: Original strand, 19421 - 19491
Alignment:
Q  153 gattttaacacaggcttacaatcctcaatagacatggaaggagcatgaatatgttcatcagctatcataca 223  Q
    |||| ||||| ||||||||||||||||||||||||||||  |||| |||||| || |||| ||||||||||    
T  19421 gattataacaaaggcttacaatcctcaatagacatggaataagcaagaatatttttatcatctatcataca 19491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 62 - 253
Target Start/End: Complemental strand, 28220869 - 28220686
Alignment:
Q  62 atttgcatcttcagaatcttcctccaaactccctattgaaagttcaaaatcttctaaagaggatggagaacattggttgattaaatacttagattttaac 161  Q
    ||||||||||||| ||||||||| ||||||   ||||||  | ||||| ||| ||||| | |||| |||||| |||  |||||||| ||||     |||     
T  28220869 atttgcatcttcaaaatcttccttcaaactg--tattgattgctcaaactctgctaaatatgatgaagaacaatggacgattaaatgctta-----taaa 28220777  T
Q  162 acaggcttacaatcctcaatagacatggaaggagcatgaatatgttcatcagctatcatacaatcatcagcagaactttcagcaggaacatc 253  Q
    ||| |||||||||||||| ||||| |||||| ||||||||||| |||||  ||||||||||||| || ||||||| |||||||| |||||||    
T  28220776 acatgcttacaatcctca-tagacttggaagaagcatgaatattttcattggctatcatacaattatgagcagaattttcagcatgaacatc 28220686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 223
Target Start/End: Original strand, 28218923 - 28218993
Alignment:
Q  153 gattttaacacaggcttacaatcctcaatagacatggaaggagcatgaatatgttcatcagctatcataca 223  Q
    |||| ||||| ||||||||||||||||||||||||||||  |||| |||||| || |||| ||||||||||    
T  28218923 gattataacaaaggcttacaatcctcaatagacatggaataagcaagaatatttttatcatctatcataca 28218993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 62 - 182
Target Start/End: Complemental strand, 28133901 - 28133788
Alignment:
Q  62 atttgcatcttcagaatcttcctccaaactccctattgaaagttcaaaatcttctaaagaggatggagaacattggttgattaaatacttagattttaac 161  Q
    ||||||||||||| ||||||||| ||||| |  ||||||| | ||||| ||| ||||| | |||| |||||| | | ||||||||| ||||     ||||    
T  28133901 atttgcatcttcaaaatcttccttcaaacac--tattgaaggctcaaactctactaaatatgatgaagaacaatagatgattaaatgctta-----taac 28133809  T
Q  162 acaggcttacaatcctcaata 182  Q
    ||| |||||||||||||||||    
T  28133808 acatgcttacaatcctcaata 28133788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 1718335 - 1718291
Alignment:
Q  62 atttgcatcttcagaatcttcctccaaactccctattgaaagttc 106  Q
    ||||||||||||| ||||||||||||||| || ||||||||||||    
T  1718335 atttgcatcttcaaaatcttcctccaaacaccttattgaaagttc 1718291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0455 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0455
Description:

Target: scaffold0455; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 62 - 182
Target Start/End: Complemental strand, 11937 - 11824
Alignment:
Q  62 atttgcatcttcagaatcttcctccaaactccctattgaaagttcaaaatcttctaaagaggatggagaacattggttgattaaatacttagattttaac 161  Q
    ||||||||||||| ||||||||| ||||| |  ||||||| | ||||| ||| ||||| | |||| |||||| | | ||||||||| ||||     ||||    
T  11937 atttgcatcttcaaaatcttccttcaaacac--tattgaaggctcaaactctactaaatatgatgaagaacaatagatgattaaatgctta-----taac 11845  T
Q  162 acaggcttacaatcctcaata 182  Q
    ||| |||||||||||||||||    
T  11844 acatgcttacaatcctcaata 11824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 250
Target Start/End: Complemental strand, 12498212 - 12498123
Alignment:
Q  161 cacaggcttacaatcctcaatagacatggaaggagcatgaatatgttcatcagctatcatacaatcatcagcagaactttcagcaggaac 250  Q
    |||||| ||||||||||||||||| ||||||| ||||| ||||| ||| ||| || |   ||||||||  |||||| |||||| ||||||    
T  12498212 cacaggattacaatcctcaatagatatggaagaagcatcaatattttcttcaacttttgcacaatcatgtgcagaattttcagtaggaac 12498123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 250
Target Start/End: Complemental strand, 12522077 - 12521988
Alignment:
Q  161 cacaggcttacaatcctcaatagacatggaaggagcatgaatatgttcatcagctatcatacaatcatcagcagaactttcagcaggaac 250  Q
    |||||| ||||||||||||||||| ||||||| ||||| ||||| ||| ||| || |   ||||||||  |||||| |||||| ||||||    
T  12522077 cacaggattacaatcctcaatagatatggaagaagcatcaatattttcttcaacttttgcacaatcatgtgcagaattttcagtaggaac 12521988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University