View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11260_low_32 (Length: 237)

Name: NF11260_low_32
Description: NF11260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11260_low_32
NF11260_low_32
[»] chr3 (44 HSPs)
chr3 (1-222)||(2124585-2124806)
chr3 (1-104)||(30589830-30589933)
chr3 (1-108)||(36054004-36054111)
chr3 (1-108)||(26556852-26556959)
chr3 (1-102)||(23360562-23360663)
chr3 (1-102)||(23367402-23367503)
chr3 (1-100)||(46223308-46223407)
chr3 (1-103)||(26292563-26292664)
chr3 (1-102)||(38628820-38628921)
chr3 (1-103)||(24149836-24149938)
chr3 (1-101)||(19551153-19551254)
chr3 (1-105)||(26004845-26004950)
chr3 (5-103)||(23697960-23698059)
chr3 (5-103)||(23716415-23716514)
chr3 (5-103)||(23734871-23734970)
chr3 (116-211)||(41386514-41386609)
chr3 (1-100)||(45214086-45214185)
chr3 (1-55)||(50899493-50899547)
chr3 (5-102)||(23754534-23754633)
chr3 (25-105)||(35731864-35731944)
chr3 (1-105)||(36673257-36673361)
chr3 (1-105)||(52617084-52617188)
chr3 (1-108)||(31645358-31645465)
chr3 (1-98)||(44904961-44905058)
chr3 (1-100)||(20833891-20833990)
chr3 (33-99)||(33417082-33417148)
chr3 (1-103)||(45254554-45254656)
chr3 (1-55)||(50761271-50761325)
chr3 (1-108)||(50902412-50902523)
chr3 (64-109)||(6783181-6783226)
chr3 (65-102)||(27593996-27594033)
chr3 (1-50)||(48380133-48380182)
chr3 (1-55)||(10661180-10661234)
chr3 (1-55)||(10728174-10728228)
chr3 (1-55)||(18750626-18750680)
chr3 (1-55)||(23752551-23752605)
chr3 (65-103)||(28845679-28845717)
chr3 (1-55)||(33416977-33417031)
chr3 (1-55)||(34483252-34483306)
chr3 (14-100)||(43152028-43152114)
chr3 (1-50)||(39039069-39039118)
chr3 (1-50)||(52811374-52811423)
chr3 (1-49)||(34290220-34290268)
chr3 (1-49)||(50902514-50902562)
[»] chr7 (27 HSPs)
chr7 (105-202)||(22061239-22061335)
chr7 (1-107)||(152846-152952)
chr7 (1-105)||(47912521-47912625)
chr7 (1-103)||(12252385-12252487)
chr7 (1-103)||(30111778-30111880)
chr7 (1-103)||(33475522-33475624)
chr7 (1-103)||(43056687-43056789)
chr7 (1-89)||(35089110-35089198)
chr7 (1-99)||(27417651-27417749)
chr7 (1-109)||(28343303-28343411)
chr7 (1-111)||(23102284-23102394)
chr7 (1-55)||(29893949-29894003)
chr7 (1-102)||(18839287-18839388)
chr7 (1-106)||(510639-510746)
chr7 (1-105)||(30823580-30823684)
chr7 (107-191)||(34314726-34314810)
chr7 (65-105)||(46197102-46197142)
chr7 (1-48)||(26183087-26183134)
chr7 (13-103)||(34114540-34114630)
chr7 (1-55)||(42677294-42677348)
chr7 (1-103)||(48136361-48136463)
chr7 (1-101)||(12741366-12741467)
chr7 (65-102)||(39300426-39300463)
chr7 (1-50)||(46035502-46035551)
chr7 (1-103)||(3023918-3024019)
chr7 (1-47)||(28034295-28034341)
chr7 (1-55)||(29613952-29614006)
[»] chr2 (25 HSPs)
chr2 (1-109)||(29941874-29941982)
chr2 (1-103)||(45547900-45548002)
chr2 (1-107)||(7486952-7487058)
chr2 (1-102)||(6288556-6288657)
chr2 (1-103)||(35171380-35171486)
chr2 (1-98)||(36597649-36597746)
chr2 (1-53)||(14919805-14919857)
chr2 (1-109)||(26789778-26789886)
chr2 (1-107)||(18178265-18178371)
chr2 (1-105)||(25289148-25289252)
chr2 (35-103)||(24192662-24192730)
chr2 (1-48)||(45497497-45497544)
chr2 (1-48)||(45505239-45505286)
chr2 (1-103)||(3464580-3464682)
chr2 (35-103)||(11535693-11535761)
chr2 (66-101)||(24935292-24935327)
chr2 (66-101)||(25683985-25684020)
chr2 (1-52)||(38821301-38821352)
chr2 (13-103)||(2289281-2289371)
chr2 (1-55)||(13832716-13832770)
chr2 (73-111)||(33136662-33136700)
chr2 (1-55)||(43079476-43079530)
chr2 (2-55)||(7027899-7027952)
chr2 (67-104)||(15283596-15283633)
chr2 (1-53)||(20156630-20156682)
[»] chr8 (33 HSPs)
chr8 (1-107)||(9458492-9458598)
chr8 (1-107)||(40264270-40264376)
chr8 (1-105)||(7149019-7149123)
chr8 (1-103)||(4656061-4656163)
chr8 (1-98)||(10795379-10795476)
chr8 (1-103)||(41385869-41385971)
chr8 (1-95)||(43604382-43604476)
chr8 (1-96)||(42275929-42276024)
chr8 (1-98)||(1605804-1605901)
chr8 (1-55)||(43489905-43489959)
chr8 (1-82)||(39371185-39371266)
chr8 (18-109)||(37566514-37566605)
chr8 (1-49)||(2113773-2113821)
chr8 (1-105)||(14781245-14781349)
chr8 (1-103)||(18957833-18957935)
chr8 (1-107)||(28620669-28620774)
chr8 (1-103)||(35143071-35143173)
chr8 (1-105)||(18305074-18305178)
chr8 (1-97)||(38805929-38806025)
chr8 (1-101)||(44724898-44724998)
chr8 (31-98)||(17791584-17791651)
chr8 (35-102)||(30381822-30381889)
chr8 (1-55)||(16365270-16365324)
chr8 (1-55)||(42304790-42304844)
chr8 (1-50)||(31626293-31626342)
chr8 (1-49)||(40012348-40012396)
chr8 (1-52)||(9209895-9209946)
chr8 (1-55)||(4030491-4030545)
chr8 (1-55)||(19717028-19717082)
chr8 (1-55)||(20831127-20831181)
chr8 (64-102)||(42366945-42366983)
chr8 (1-50)||(5266793-5266842)
chr8 (1-49)||(41964650-41964698)
[»] chr5 (17 HSPs)
chr5 (1-107)||(11632681-11632787)
chr5 (1-102)||(10553439-10553540)
chr5 (1-98)||(10553721-10553818)
chr5 (1-104)||(13949799-13949902)
chr5 (1-103)||(40411402-40411505)
chr5 (1-94)||(18676939-18677032)
chr5 (1-104)||(3603458-3603561)
chr5 (1-102)||(13717088-13717189)
chr5 (1-103)||(26629511-26629613)
chr5 (1-55)||(1151447-1151501)
chr5 (1-55)||(4549413-4549467)
chr5 (1-105)||(13999211-13999316)
chr5 (1-105)||(40012814-40012919)
chr5 (1-105)||(39853345-39853449)
chr5 (1-55)||(1459343-1459397)
chr5 (65-103)||(6827951-6827989)
chr5 (1-50)||(5950111-5950160)
[»] scaffold0237 (1 HSPs)
scaffold0237 (1-106)||(20443-20548)
[»] scaffold0016 (2 HSPs)
scaffold0016 (1-110)||(80785-80894)
scaffold0016 (77-105)||(81842-81870)
[»] chr6 (14 HSPs)
chr6 (1-106)||(29864748-29864853)
chr6 (1-103)||(3109349-3109451)
chr6 (1-102)||(6475743-6475844)
chr6 (1-105)||(7104517-7104621)
chr6 (1-105)||(8790009-8790113)
chr6 (1-107)||(31068413-31068519)
chr6 (1-104)||(30384170-30384273)
chr6 (1-55)||(7498083-7498137)
chr6 (66-103)||(10008374-10008411)
chr6 (1-101)||(14261552-14261652)
chr6 (66-101)||(35165690-35165725)
chr6 (1-55)||(34774378-34774432)
chr6 (1-50)||(4199640-4199689)
chr6 (72-101)||(5958074-5958103)
[»] chr4 (30 HSPs)
chr4 (1-105)||(42315867-42315971)
chr4 (1-103)||(7808983-7809085)
chr4 (1-103)||(7820934-7821036)
chr4 (1-95)||(8583008-8583102)
chr4 (1-102)||(42217448-42217548)
chr4 (116-211)||(37559937-37560032)
chr4 (1-97)||(3434832-3434928)
chr4 (4-102)||(56399028-56399125)
chr4 (1-107)||(38234596-38234702)
chr4 (35-108)||(47686840-47686913)
chr4 (1-105)||(27769057-27769161)
chr4 (30-102)||(44930623-44930695)
chr4 (1-103)||(32683134-32683236)
chr4 (1-55)||(49834020-49834074)
chr4 (1-55)||(52110245-52110299)
chr4 (65-107)||(54510609-54510651)
chr4 (1-102)||(23988190-23988291)
chr4 (64-103)||(28846169-28846208)
chr4 (1-100)||(41726099-41726198)
chr4 (1-108)||(54342140-54342247)
chr4 (65-103)||(388616-388654)
chr4 (1-55)||(32323062-32323116)
chr4 (1-55)||(48531968-48532022)
chr4 (65-105)||(5117866-5117906)
chr4 (1-47)||(28484865-28484911)
chr4 (66-99)||(10600643-10600676)
chr4 (74-103)||(44929875-44929904)
chr4 (1-49)||(5801698-5801746)
chr4 (77-109)||(31314416-31314448)
chr4 (1-49)||(53272832-53272880)
[»] scaffold0153 (1 HSPs)
scaffold0153 (1-103)||(33824-33926)
[»] chr1 (25 HSPs)
chr1 (1-103)||(14389407-14389509)
chr1 (1-103)||(45319460-45319562)
chr1 (1-99)||(45535742-45535840)
chr1 (1-103)||(52706373-52706475)
chr1 (1-98)||(26881820-26881917)
chr1 (1-105)||(48198940-48199044)
chr1 (1-105)||(48207523-48207627)
chr1 (1-55)||(39758868-39758922)
chr1 (1-55)||(39764222-39764276)
chr1 (1-105)||(6313569-6313673)
chr1 (1-104)||(25613085-25613188)
chr1 (1-103)||(29395537-29395639)
chr1 (35-104)||(36403103-36403172)
chr1 (1-108)||(28386552-28386660)
chr1 (65-103)||(10897691-10897729)
chr1 (1-103)||(20111681-20111783)
chr1 (65-107)||(33242456-33242498)
chr1 (1-103)||(51702587-51702689)
chr1 (1-98)||(1923373-1923470)
chr1 (1-102)||(49231977-49232078)
chr1 (1-104)||(9321617-9321721)
chr1 (1-55)||(19894809-19894863)
chr1 (1-55)||(29220105-29220159)
chr1 (1-55)||(51826008-51826062)
chr1 (1-50)||(5494310-5494359)
[»] scaffold0472 (1 HSPs)
scaffold0472 (1-107)||(933-1039)
[»] scaffold0042 (1 HSPs)
scaffold0042 (1-106)||(57166-57271)


Alignment Details
Target: chr3 (Bit Score: 174; Significance: 9e-94; HSPs: 44)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 2124806 - 2124585
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||        |||||||||||||||||||||||||||||||||||||    
T  2124806 tttaaaatcccacaaaatcaatacaatccaacaaagtcttttaaaattttcaagattttttttatcaaaacagtcttttaaaatctcaatccaatacacc 2124707  T
Q  101 cccctaagtctgtggtggtgtgggaagtaatttcttcctccgttggtgaaatcagaatgttgattatcttgttcctaccgttttgtacatattttgccta 200  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2124706 cccctaagtctctgatggtgtgggaagtaatttcttcctccgttggtgaaatcagaatgttgattatcttgttcctaccgttttgtacatattttgccta 2124607  T
Q  201 ttgacattgaattcaacctaac 222  Q
    ||||||||||||| ||||||||    
T  2124606 ttgacattgaattgaacctaac 2124585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 30589830 - 30589933
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||        |||||||||||||||||||||||||||||||||||||    
T  30589830 tttaaaatcccacaaaatcaatacaatccaacaaagtcttttaaaatcttcaagattttttctatcaaaacagtcttttaaaatctcaatccaatacacc 30589929  T
Q  101 cccc 104  Q
    ||||    
T  30589930 cccc 30589933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 36054111 - 36054004
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||        ||||||| |||||||||||||||||||||||||||||    
T  36054111 tttaaaatcccacaaaatcaatacaatccaacaaagtcttttaaaatcttcaagattttttctatcaaaatagtcttttaaaatctcaatccaatacacc 36054012  T
Q  101 cccctaag 108  Q
    ||||||||    
T  36054011 cccctaag 36054004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 26556852 - 26556959
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    ||||||||| |||||||||||||||||| |||||| |||||||||||||| ||||        |||||||||||||||||||||||||||||||||||||    
T  26556852 tttaaaatcccacaaaatcaatacaatcgaacaaagtcttttaaaatctttaagattttttctatcaaaacagtcttttaaaatctcaatccaatacacc 26556951  T
Q  101 cccctaag 108  Q
    ||||||||    
T  26556952 cccctaag 26556959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 23360562 - 23360663
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||        ||||||||||||||||| |||||||||||||||||||    
T  23360562 tttaaaatcccacaaaatcaatacaatccaacaaagtcttttaaaatcttcaagattttttatatcaaaacagtcttttagaatctcaatccaatacacc 23360661  T
Q  101 cc 102  Q
    ||    
T  23360662 cc 23360663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 23367402 - 23367503
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||        ||||||||||||||||| |||||||||||||||||||    
T  23367402 tttaaaatcccacaaaatcaatacaatccaacaaagtcttttaaaatcttcaagattttttatatcaaaacagtcttttagaatctcaatccaatacacc 23367501  T
Q  101 cc 102  Q
    ||    
T  23367502 cc 23367503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 46223407 - 46223308
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||        ||||||||||||||||||||||||||| |||||||||    
T  46223407 tttaaaatcccacaaaatcaatacaatccaacaaagtcttttaaaatcttcaagattttttctatcaaaacagtcttttaaaatctcaattcaatacacc 46223308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 26292664 - 26292563
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    ||||||||  |||||||| |||||||||||||||| |||||||||||||||||||        |||||||||||||||||||||||||||||||||||||    
T  26292664 tttaaaattccacaaaat-aatacaatccaacaaagtcttttaaaatcttcaagatattttctatcaaaacagtcttttaaaatctcaatccaatacacc 26292566  T
Q  101 ccc 103  Q
    |||    
T  26292565 ccc 26292563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 38628921 - 38628820
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    ||||||||| ||||||||||||||||| ||||||| ||||||||||| |||||||        ||||||| |||||||||||||||||||||||||||||    
T  38628921 tttaaaatcccacaaaatcaatacaattcaacaaagtcttttaaaattttcaagattttttctatcaaaagagtcttttaaaatctcaatccaatacacc 38628822  T
Q  101 cc 102  Q
    ||    
T  38628821 cc 38628820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 24149938 - 24149836
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    ||||||||| ||||||||||||| ||||||||||| || ||||||||||||||||        ||||||| ||||||||||||||| |||||||||||||    
T  24149938 tttaaaatcccacaaaatcaatataatccaacaaagtcatttaaaatcttcaagattttttctatcaaaatagtcttttaaaatcttaatccaatacacc 24149839  T
Q  101 ccc 103  Q
    |||    
T  24149838 ccc 24149836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 19551254 - 19551153
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttc-aagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacac 99  Q
    ||||||||| ||||||||||||||||||||| ||| ||||||||||||||| || |        ||||||||||||||||||||||||||||||||||||    
T  19551254 tttaaaatcccacaaaatcaatacaatccaataaagtcttttaaaatcttcaaaaaaaaactctatcaaaacagtcttttaaaatctcaatccaatacac 19551155  T
Q  100 cc 101  Q
    ||    
T  19551154 cc 19551153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 26004950 - 26004845
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnn-atcaaaacagtcttttaaaatctcaatccaatacac 99  Q
    ||||||||| ||||||||||||||||| ||||||| ||| ||||||| || ||||         ||||||||||||||||||||||||||||||||||||    
T  26004950 tttaaaatcccacaaaatcaatacaattcaacaaactctcttaaaatatttaagatttttttctatcaaaacagtcttttaaaatctcaatccaatacac 26004851  T
Q  100 ccccct 105  Q
    ||||||    
T  26004850 ccccct 26004845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 5 - 103
Target Start/End: Original strand, 23697960 - 23698059
Alignment:
Q  5 aaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttc-aagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacaccccc 103  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||| || |        ||||||||| | ||||||||||||||||||||||||||||    
T  23697960 aaatcccacaaaatcaatacaatccaacaaagtcttttaaaatcttcaaaaataaattctatcaaaacaatgttttaaaatctcaatccaatacaccccc 23698059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 5 - 103
Target Start/End: Original strand, 23716415 - 23716514
Alignment:
Q  5 aaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttc-aagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacaccccc 103  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||| || |        ||||||||| | ||||||||||||||||||||||||||||    
T  23716415 aaatcccacaaaatcaatacaatccaacaaagtcttttaaaatcttcaaaaataaattctatcaaaacaatgttttaaaatctcaatccaatacaccccc 23716514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 5 - 103
Target Start/End: Original strand, 23734871 - 23734970
Alignment:
Q  5 aaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttc-aagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacaccccc 103  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||| || |        ||||||||| | ||||||||||||||||||||||||||||    
T  23734871 aaatcccacaaaatcaatacaatccaacaaagtcttttaaaatcttcaaaaataaattctatcaaaacaatgttttaaaatctcaatccaatacaccccc 23734970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 116 - 211
Target Start/End: Complemental strand, 41386609 - 41386514
Alignment:
Q  116 tggtgtgggaagtaatttcttcctccgttggtgaaatcagaatgttgattatcttgttcctaccgttttgtacatattttgcctattgacattgaa 211  Q
    ||||||| |||||  |||||||||||  | ||||||||  |||| ||||||||||||||||||  |||||||||||||||||||| ||||||||||    
T  41386609 tggtgtgcgaagtgctttcttcctccactagtgaaatccaaatgctgattatcttgttcctacaattttgtacatattttgcctactgacattgaa 41386514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 45214185 - 45214086
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    ||||||||||||||||||||||||||||  ||||| |||||||||||||| ||||          ||||||| ||||| |||||||||||||||||||||    
T  45214185 tttaaaatctcacaaaatcaatacaatcacacaaagtcttttaaaatctttaagattttttttgccaaaacaatctttcaaaatctcaatccaatacacc 45214086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 50899547 - 50899493
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaaga 55  Q
    |||||||||  |||||||||||||||||||||||| |||||||||||||||||||    
T  50899547 tttaaaatccgacaaaatcaatacaatccaacaaagtcttttaaaatcttcaaga 50899493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 102
Target Start/End: Original strand, 23754534 - 23754633
Alignment:
Q  5 aaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnn--atcaaaacagtcttttaaaatctcaatccaatacacccc 102  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||||| |          ||||| | | |||||||||||||||||||||||||||||    
T  23754534 aaatcccacaaaatcaatacaatccaacaaagtcttttaaaatcttcaaaaaaaaaaatctatcaacataatcttttaaaatctcaatccaatacacccc 23754633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 105
Target Start/End: Original strand, 35731864 - 35731944
Alignment:
Q  25 aatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacccccct 105  Q
    ||||||||||| |||||||||||||||||||        ||||||||| ||| ||||||||||||||||||||||| ||||    
T  35731864 aatccaacaaagtcttttaaaatcttcaagattttttctatcaaaacaatctgttaaaatctcaatccaatacaccaccct 35731944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 36673361 - 36673257
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    |||||||||||||| |||||||||||||  ||| | |||||||||||||| ||||        || |||| ||||||||||||||  |||||||||||||    
T  36673361 tttaaaatctcacagaatcaatacaatctcacacagtcttttaaaatcttaaagactttttttattaaaatagtcttttaaaatcctaatccaatacacc 36673262  T
Q  101 cccct 105  Q
    |||||    
T  36673261 cccct 36673257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 52617188 - 52617084
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    |||||||||||||| |||||||||||||  ||||| |||||||||||||| ||||        || ||||  |||||||||||||  |||||||||||||    
T  52617188 tttaaaatctcacagaatcaatacaatctcacaaagtcttttaaaatcttaaagactttttttattaaaattgtcttttaaaatcctaatccaatacacc 52617089  T
Q  101 cccct 105  Q
    |||||    
T  52617088 cccct 52617084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 31645465 - 31645358
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    |||||||||||||| |||||||||||||  ||| | |||||||||||||| ||||        || ||||  |||||||||||||| |||||||||||||    
T  31645465 tttaaaatctcacagaatcaatacaatctcacacagtcttttaaaatcttaaagactttttttattaaaattgtcttttaaaatcttaatccaatacacc 31645366  T
Q  101 cccctaag 108  Q
    ||| ||||    
T  31645365 cccttaag 31645358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 44905058 - 44904961
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaataca 98  Q
    |||||||||||||| |||||||||||||  ||| | |||||||||||||| ||||        || |||| ||||||||||||||| |||||||||||    
T  44905058 tttaaaatctcacagaatcaatacaatctcacacagtcttttaaaatcttaaagaccttttttattaaaatagtcttttaaaatcttaatccaataca 44904961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 20833891 - 20833990
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    |||||||||| ||| |||||||||||||  ||| |||||||||||||||| ||||        || |||| ||||||||||||||  |||||||||||||    
T  20833891 tttaaaatcttacagaatcaatacaatcttacacaatcttttaaaatcttaaagactttttttattaaaatagtcttttaaaatcctaatccaatacacc 20833990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 33 - 99
Target Start/End: Original strand, 33417082 - 33417148
Alignment:
Q  33 aaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacac 99  Q
    ||||||||||||||| |||||||        ||||||| ||||||||||||||||||||||||||||    
T  33417082 aaaatcttttaaaattttcaagactttttcaatcaaaatagtcttttaaaatctcaatccaatacac 33417148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 45254656 - 45254554
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    |||||||||||||| |||||||||||||  ||| | |||||||||||||| ||||        || |||| ||||||||||||||  |||| ||||||||    
T  45254656 tttaaaatctcacagaatcaatacaatctcacacagtcttttaaaatcttaaagattttttttattaaaatagtcttttaaaatcctaatctaatacacc 45254557  T
Q  101 ccc 103  Q
    |||    
T  45254556 ccc 45254554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 50761325 - 50761271
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaaga 55  Q
    |||||||||||||| |||||||||||||  ||| |||||||||||||||| ||||    
T  50761325 tttaaaatctcacagaatcaatacaatctcacacaatcttttaaaatcttaaaga 50761271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 50902523 - 50902412
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnn----atcaaaacagtcttttaaaatctcaatccaata 96  Q
    |||||||||||||| |||||||||||||  ||| | |||||||||||||| ||||            || |||| ||||||||||||||| |||||||||    
T  50902523 tttaaaatctcacagaatcaatacaatctcacacagtcttttaaaatcttaaagactttttttttttattaaaatagtcttttaaaatcttaatccaata 50902424  T
Q  97 cacccccctaag 108  Q
    ||||||||||||    
T  50902423 cacccccctaag 50902412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 109
Target Start/End: Complemental strand, 6783226 - 6783181
Alignment:
Q  64 atcaaaacagtcttttaaaatctcaatccaatacacccccctaagt 109  Q
    ||||||| ||||||||||||| |||||||||||||||| |||||||    
T  6783226 atcaaaatagtcttttaaaatttcaatccaatacacccacctaagt 6783181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 102
Target Start/End: Original strand, 27593996 - 27594033
Alignment:
Q  65 tcaaaacagtcttttaaaatctcaatccaatacacccc 102  Q
    |||||| |||||||||||||||||||||||||||||||    
T  27593996 tcaaaatagtcttttaaaatctcaatccaatacacccc 27594033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 48380133 - 48380182
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatctt 50  Q
    |||||||||||||| |||||||||||||  ||| ||||||||||||||||    
T  48380133 tttaaaatctcacagaatcaatacaatctcacacaatcttttaaaatctt 48380182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 10661180 - 10661234
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaaga 55  Q
    |||||||| ||||| |||||||||||||  ||| |||||||||||||||| ||||    
T  10661180 tttaaaatatcacagaatcaatacaatctcacacaatcttttaaaatcttaaaga 10661234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 10728228 - 10728174
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaaga 55  Q
    |||||||||||||| |||||||||||||  ||| | |||||||||||||| ||||    
T  10728228 tttaaaatctcacagaatcaatacaatctcacacattcttttaaaatcttaaaga 10728174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 18750626 - 18750680
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaaga 55  Q
    |||||||||||||| |||||||||||||  ||| | |||||||||||||| ||||    
T  18750626 tttaaaatctcacagaatcaatacaatctcacacagtcttttaaaatcttaaaga 18750680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 23752605 - 23752551
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaaga 55  Q
    |||||||||||||| |||||||||||||  ||| | |||||||||||||| ||||    
T  23752605 tttaaaatctcacagaatcaatacaatctcacacagtcttttaaaatcttaaaga 23752551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 103
Target Start/End: Original strand, 28845679 - 28845717
Alignment:
Q  65 tcaaaacagtcttttaaaatctcaatccaatacaccccc 103  Q
    |||||| |||||||||||| |||||||||||||||||||    
T  28845679 tcaaaatagtcttttaaaacctcaatccaatacaccccc 28845717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 33416977 - 33417031
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaaga 55  Q
    |||||||||||| ||| ||  |||||||| | |||||||||||||||||||||||    
T  33416977 tttaaaatctcataaagtctttacaatcctataaaatcttttaaaatcttcaaga 33417031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 34483306 - 34483252
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaaga 55  Q
    |||||||||||||| |||||||||||||  ||| | |||||||||||||| ||||    
T  34483306 tttaaaatctcacagaatcaatacaatctcacacagtcttttaaaatcttaaaga 34483252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 100
Target Start/End: Original strand, 43152028 - 43152114
Alignment:
Q  14 aaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    ||||| |||||| ||| ||| |||||||||||||||||||||           |||| |||||||||||||||||||||||||||||    
T  43152028 aaaattaatacattcctacacaatcttttaaaatcttcaagactttgtttgctaaaatagtcttttaaaatctcaatccaatacacc 43152114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 39039069 - 39039118
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatctt 50  Q
    |||||||||||||| |||||||||||||  ||||| || |||||||||||    
T  39039069 tttaaaatctcacagaatcaatacaatctcacaaagtcatttaaaatctt 39039118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 52811374 - 52811423
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatctt 50  Q
    |||||||||||||| |||||||||||||  ||| | ||||||||||||||    
T  52811374 tttaaaatctcacagaatcaatacaatctcacacagtcttttaaaatctt 52811423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 34290268 - 34290220
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatct 49  Q
    ||||||||| || |||||||||||||||  ||||| |||||||||||||    
T  34290268 tttaaaatcccataaaatcaatacaatcacacaaagtcttttaaaatct 34290220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 50902562 - 50902514
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatct 49  Q
    |||||||||||||| |||||||||||||  ||| | |||||||||||||    
T  50902562 tttaaaatctcacagaatcaatacaatctcacacagtcttttaaaatct 50902514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 105 - 202
Target Start/End: Original strand, 22061239 - 22061335
Alignment:
Q  105 taagtctgtggtggtgtgggaagtaatttcttcctccgttggtgaaatcagaatgttgattatcttgttcctaccgttttgtacatattttgcctatt 202  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22061239 taagtctgtggtggtgtgggaagtaatt-cttcctccgttagtgaaatcagaatgttgattatcttgttcctaccgttttgtacatattttgcctatt 22061335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 152846 - 152952
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    |||||||||  |||||||||||||||||||||||| |||||||||||||||||||        |||||||||||||||||||||||||||||||||||||    
T  152846 tttaaaatcctacaaaatcaatacaatccaacaaagtcttttaaaatcttcaagattttttctatcaaaacagtcttttaaaatctcaatccaatacacc 152945  T
Q  101 cccctaa 107  Q
    |||||||    
T  152946 cccctaa 152952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 47912625 - 47912521
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||        ||||||||||||||||||||||||||||||||| |||    
T  47912625 tttaaaatcccacaaaatcaatacaatccaacaaagtcttttaaaatcttcaagattttttctatcaaaacagtcttttaaaatctcaatccaatatacc 47912526  T
Q  101 cccct 105  Q
    |||||    
T  47912525 cccct 47912521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 12252487 - 12252385
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||        ||||||||| |||||||||||||||||||||||||||    
T  12252487 tttaaaatcccacaaaatcaatacaatccaacaaagtcttttaaaatcttcaagattttttctatcaaaacaatcttttaaaatctcaatccaatacacc 12252388  T
Q  101 ccc 103  Q
    |||    
T  12252387 ccc 12252385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 30111778 - 30111880
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||        ||||||| |||||||||||||||||||||||||||||    
T  30111778 tttaaaatcccacaaaatcaatacaatccaacaaagtcttttaaaatcttcaagattttttctatcaaaatagtcttttaaaatctcaatccaatacacc 30111877  T
Q  101 ccc 103  Q
    |||    
T  30111878 ccc 30111880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 33475522 - 33475624
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||||||||||        |||||||||||||||||||||||||||| ||||||||    
T  33475522 tttaaaatttcacaaaatcaatacaatccaacaaagtcttttaaaatcttcaagattttttctatcaaaacagtcttttaaaatctcaatcaaatacacc 33475621  T
Q  101 ccc 103  Q
    |||    
T  33475622 ccc 33475624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 43056789 - 43056687
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||        ||||||||| ||||||||||||||||| |||||||||    
T  43056789 tttaaaatcccacaaaatcaatacaatccaacaaagtcttttaaaatcttcaagattttttctatcaaaacattcttttaaaatctcaattcaatacacc 43056690  T
Q  101 ccc 103  Q
    |||    
T  43056689 ccc 43056687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 35089198 - 35089110
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaa 89  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||        ||||||||||||||||||||||||||    
T  35089198 tttaaaatctcacaaaatcaatacaatccaacaaagtcttttaaaatcttcaagattttttctatcaaaacagtcttttaaaatctcaa 35089110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 27417749 - 27417651
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacac 99  Q
    ||||||||| |||||||||||||||||| |||||| |||||||||||||||||||        ||||||| | ||||||||||||||||||||||||||    
T  27417749 tttaaaatcccacaaaatcaatacaatctaacaaagtcttttaaaatcttcaagattttttctatcaaaatactcttttaaaatctcaatccaatacac 27417651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 28343303 - 28343411
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    |||||||||||||| |||||||||||||  ||| | |||||||||||||| ||||        || |||| |||||||||||||| ||||||||||||||    
T  28343303 tttaaaatctcacagaatcaatacaatctcacacagtcttttaaaatcttaaagactttttttattaaaatagtcttttaaaatcccaatccaatacacc 28343402  T
Q  101 cccctaagt 109  Q
    |||||||||    
T  28343403 cccctaagt 28343411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 23102284 - 23102394
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    |||||||||||||| |||||||||||||  ||| | |||||||||||||| ||||        || |||| ||||||||||||||  |||||||||||||    
T  23102284 tttaaaatctcacagaatcaatacaatctcacacagtcttttaaaatcttaaagactttttttattaaaatagtcttttaaaatcctaatccaatacacc 23102383  T
Q  101 cccctaagtct 111  Q
    ||||| |||||    
T  23102384 ccccttagtct 23102394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 29893949 - 29894003
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaaga 55  Q
    ||||||||||||||||||||||||||||  ||| |||||||||||||||| ||||    
T  29893949 tttaaaatctcacaaaatcaatacaatctcacacaatcttttaaaatcttaaaga 29894003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 18839287 - 18839388
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    |||||||||||||| |||||||||||||  ||| |||||||||||||||| ||||        || |||| | ||||||||||||  |||||||||||||    
T  18839287 tttaaaatctcacagaatcaatacaatctcacacaatcttttaaaatcttaaagactttttttattaaaataatcttttaaaatcctaatccaatacacc 18839386  T
Q  101 cc 102  Q
    ||    
T  18839387 cc 18839388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 510639 - 510746
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnn--atcaaaacagtcttttaaaatctcaatccaataca 98  Q
    |||||||||||||| |||||||||||||  ||| | |||||||||||||| ||||          || |||| |||||||||||||| ||||||||||||    
T  510639 tttaaaatctcacagaatcaatacaatctcacacagtcttttaaaatcttaaagactttttttttattaaaatagtcttttaaaatcccaatccaataca 510738  T
Q  99 ccccccta 106  Q
    ||||||||    
T  510739 ccccccta 510746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 30823580 - 30823684
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    |||||||||||||| |||||||||||||  ||| | |||||||||||||| ||||        || |||| ||||||||||||||  ||| |||||||||    
T  30823580 tttaaaatctcacagaatcaatacaatctcacacagtcttttaaaatcttaaagactttttttattaaaatagtcttttaaaatcctaattcaatacacc 30823679  T
Q  101 cccct 105  Q
    |||||    
T  30823680 cccct 30823684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 107 - 191
Target Start/End: Complemental strand, 34314810 - 34314726
Alignment:
Q  107 agtctgtggtggtgtgggaagtaatttcttcctccgttggtgaaatcagaatgttgattatcttgttcctaccgttttgtacata 191  Q
    ||||||||||||| ||||||||  ||||||||||| ||  |||||||  |||| | | ||||||||||||||| |||||||||||    
T  34314810 agtctgtggtggtttgggaagtgctttcttcctccatttttgaaatccaaatgcttactatcttgttcctaccattttgtacata 34314726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 65 - 105
Target Start/End: Complemental strand, 46197142 - 46197102
Alignment:
Q  65 tcaaaacagtcttttaaaatctcaatccaatacacccccct 105  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  46197142 tcaaaacaatcttttaaaatctcaatccaatacacccccct 46197102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 26183087 - 26183134
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatc 48  Q
    |||||||||||||| |||||||||||||| ||||| ||||||||||||    
T  26183087 tttaaaatctcacataatcaatacaatcccacaaagtcttttaaaatc 26183134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 13 - 103
Target Start/End: Complemental strand, 34114630 - 34114540
Alignment:
Q  13 caaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacaccccc 103  Q
    ||||||||||||||||  ||||| |||||||||||||| ||||          ||||||||||||| |||||| |||||||||||||||||    
T  34114630 caaaatcaatacaatcacacaaagtcttttaaaatctttaagattttttctgccaaaacagtctttcaaaatcccaatccaatacaccccc 34114540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 42677348 - 42677294
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaaga 55  Q
    ||||||||  ||||||||||||||||||  |||||||||||||||||||| ||||    
T  42677348 tttaaaattccacaaaatcaatacaatcacacaaaatcttttaaaatctttaaga 42677294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 48136463 - 48136361
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    |||||||||||||| |||||||||||||  ||| ||| |||||||||||| ||||        || |||| ||||||||||||||  ||||||||| |||    
T  48136463 tttaaaatctcacagaatcaatacaatctcacacaatattttaaaatcttgaagattttttttattaaaatagtcttttaaaatcctaatccaatatacc 48136364  T
Q  101 ccc 103  Q
    |||    
T  48136363 ccc 48136361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 12741366 - 12741467
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaaga-nnnnnnnnatcaaaacagtcttttaaaatctcaatccaatacac 99  Q
    |||||||||||||| |||||||||||||  ||| | |||||||||||||| ||||         || |||| ||||||||||||||| ||||||||||||    
T  12741366 tttaaaatctcacataatcaatacaatctcacacagtcttttaaaatcttaaagacttttttttattaaaatagtcttttaaaatcttaatccaatacac 12741465  T
Q  100 cc 101  Q
    ||    
T  12741466 cc 12741467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 102
Target Start/End: Complemental strand, 39300463 - 39300426
Alignment:
Q  65 tcaaaacagtcttttaaaatctcaatccaatacacccc 102  Q
    |||||| |||||||||||||||||||||||||||||||    
T  39300463 tcaaaatagtcttttaaaatctcaatccaatacacccc 39300426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 46035551 - 46035502
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatctt 50  Q
    |||||||||||||| |||||||||||| | ||||| ||||||||||||||    
T  46035551 tttaaaatctcacagaatcaatacaattccacaaagtcttttaaaatctt 46035502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 3023918 - 3024019
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    |||||||||||||| |||||||||||||  ||| | |||||||||||||| || |        || |||| ||||||||||||||  |||||||||||||    
T  3023918 tttaaaatctcacagaatcaatacaatctcacacagtcttttaaaatctt-aaaaacttttttattaaaatagtcttttaaaatcctaatccaatacacc 3024016  T
Q  101 ccc 103  Q
    |||    
T  3024017 ccc 3024019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 28034341 - 28034295
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaat 47  Q
    ||||||||||||||||||||||||||||  ||| | |||||||||||    
T  28034341 tttaaaatctcacaaaatcaatacaatctcacacagtcttttaaaat 28034295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 29614006 - 29613952
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaaga 55  Q
    |||||||||||||| |||||||||||||  ||| | |||||||||||||| ||||    
T  29614006 tttaaaatctcacagaatcaatacaatctcacacagtcttttaaaatcttaaaga 29613952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 7e-36; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 29941874 - 29941982
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||        |||||||||||||||||||||||||||||||||||||    
T  29941874 tttaaaatcccacaaaatcaatacaatccaacaaagtcttttaaaatcttcaagattttttctatcaaaacagtcttttaaaatctcaatccaatacacc 29941973  T
Q  101 cccctaagt 109  Q
    |||||||||    
T  29941974 cccctaagt 29941982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 45547900 - 45548002
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||        |||||||||||||||||||||||||||||||||||||    
T  45547900 tttaaaatctcacaaaatcaatacaatccaacaaagtcttttaaaatcttcaagattttttctatcaaaacagtcttttaaaatctcaatccaatacacc 45547999  T
Q  101 ccc 103  Q
    |||    
T  45548000 ccc 45548002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 7487058 - 7486952
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||        |||||||| ||||||||||||||||||||||||||||    
T  7487058 tttaaaatcccacaaaatcaatacaatccaacaaagtcttttaaaatcttcaagattttttctatcaaaacggtcttttaaaatctcaatccaatacacc 7486959  T
Q  101 cccctaa 107  Q
    |||||||    
T  7486958 cccctaa 7486952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 6288657 - 6288556
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||| || |        |||||||||||||||||||||||||||||||| ||||    
T  6288657 tttaaaatcccacaaaatcaatacaatccaacaaagtcttttaaaatctttaaaaaaatttctatcaaaacagtcttttaaaatctcaatccaatccacc 6288558  T
Q  101 cc 102  Q
    ||    
T  6288557 cc 6288556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 35171486 - 35171380
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaa----tcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaata 96  Q
    |||||||||||||||||||||||||||||||| ||     |||||||||||||||||||        ||||||||||||||||||||||||||||||| |    
T  35171486 tttaaaatctcacaaaatcaatacaatccaacgaacgaagtcttttaaaatcttcaagattttttctatcaaaacagtcttttaaaatctcaatccaaca 35171387  T
Q  97 caccccc 103  Q
    |||||||    
T  35171386 caccccc 35171380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 36597746 - 36597649
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaataca 98  Q
    ||||||||||||||||||||||||||| || |||||||||||||||||||||| |        ||||||| |||| |||||||||||| |||||||||    
T  36597746 tttaaaatctcacaaaatcaatacaattcatcaaaatcttttaaaatcttcaaaaaaaattctatcaaaatagtcctttaaaatctcattccaataca 36597649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 14919857 - 14919805
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaa 53  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  14919857 tttaaaatttcacaaaatcaatacaatccaacaaaatcttttaaaattttcaa 14919805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 26789778 - 26789886
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    |||||||||||||| |||||||||||||  ||| | |||||||||||||| ||||        || |||| ||||||||||||||  |||||||||||||    
T  26789778 tttaaaatctcacagaatcaatacaatctcacacagtcttttaaaatcttaaagactttttttattaaaatagtcttttaaaatcctaatccaatacacc 26789877  T
Q  101 cccctaagt 109  Q
    |||||||||    
T  26789878 cccctaagt 26789886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 18178265 - 18178371
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    |||||||||||||| |||||||||||||  ||| | |||||||||||||| ||||        || |||| ||||||||||||||  |||||||||||||    
T  18178265 tttaaaatctcacagaatcaatacaatctcacacagtcttttaaaatcttaaagactttttttattaaaatagtcttttaaaatcctaatccaatacacc 18178364  T
Q  101 cccctaa 107  Q
    |||||||    
T  18178365 cccctaa 18178371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 25289148 - 25289252
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    |||||||||||||| |||||||||||||  ||| | |||||||||||||| ||||        || |||| ||||||||||||||  |||||||||||||    
T  25289148 tttaaaatctcacagaatcaatacaatctcacacagtcttttaaaatcttaaagattttttttattaaaatagtcttttaaaatcctaatccaatacacc 25289247  T
Q  101 cccct 105  Q
    |||||    
T  25289248 cccct 25289252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 103
Target Start/End: Complemental strand, 24192730 - 24192662
Alignment:
Q  35 aatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacaccccc 103  Q
    ||||||||||||||||||| |        ||||||| ||||||||||||||||||||||||||||||||    
T  24192730 aatcttttaaaatcttcaaaactttttttatcaaaatagtcttttaaaatctcaatccaatacaccccc 24192662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 45497497 - 45497544
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatc 48  Q
    |||||||||||| |||||||||||||||  ||||||||||||||||||    
T  45497497 tttaaaatctcaaaaaatcaatacaatcacacaaaatcttttaaaatc 45497544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 45505239 - 45505286
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatc 48  Q
    |||||||||||| |||||||||||||||  ||||||||||||||||||    
T  45505239 tttaaaatctcaaaaaatcaatacaatcacacaaaatcttttaaaatc 45505286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 3464580 - 3464682
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    ||||||||||||||||||||||| ||||  ||| | |||||||||||||| ||||        || |||| |||||| |||||||  |||||||||||||    
T  3464580 tttaaaatctcacaaaatcaatagaatctgacacagtcttttaaaatcttaaagacttttttaattaaaatagtcttgtaaaatcctaatccaatacacc 3464679  T
Q  101 ccc 103  Q
    |||    
T  3464680 ccc 3464682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 103
Target Start/End: Original strand, 11535693 - 11535761
Alignment:
Q  35 aatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacaccccc 103  Q
    |||||||||||||||||||||         |||||| ||||||||||||||||||| ||||||||||||    
T  11535693 aatcttttaaaatcttcaagactttttttgtcaaaatagtcttttaaaatctcaattcaatacaccccc 11535761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 101
Target Start/End: Complemental strand, 24935327 - 24935292
Alignment:
Q  66 caaaacagtcttttaaaatctcaatccaatacaccc 101  Q
    ||||| ||||||||||||||||||||||||||||||    
T  24935327 caaaatagtcttttaaaatctcaatccaatacaccc 24935292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 101
Target Start/End: Complemental strand, 25684020 - 25683985
Alignment:
Q  66 caaaacagtcttttaaaatctcaatccaatacaccc 101  Q
    ||||| ||||||||||||||||||||||||||||||    
T  25684020 caaaatagtcttttaaaatctcaatccaatacaccc 25683985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 38821352 - 38821301
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttca 52  Q
    |||||||||  |||||||||||| ||||  ||||||||||||||||||||||    
T  38821352 tttaaaatccaacaaaatcaatataatctcacaaaatcttttaaaatcttca 38821301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 103
Target Start/End: Original strand, 2289281 - 2289371
Alignment:
Q  13 caaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacaccccc 103  Q
    ||||||||||||||||  ||||| |||||||||||||| ||||           |||||| |||||||||||| |||||||||||||||||    
T  2289281 caaaatcaatacaatcacacaaagtcttttaaaatctttaagattcttttttctaaaacaatcttttaaaatcccaatccaatacaccccc 2289371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 13832770 - 13832716
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaaga 55  Q
    |||||||||||||| |||||||||||||  ||| | |||||||||||||| ||||    
T  13832770 tttaaaatctcacagaatcaatacaatctcacacagtcttttaaaatcttaaaga 13832716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 111
Target Start/End: Original strand, 33136662 - 33136700
Alignment:
Q  73 gtcttttaaaatctcaatccaatacacccccctaagtct 111  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  33136662 gtcttttaaaatcctaatccaatacacccccctaagtct 33136700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 43079476 - 43079530
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaaga 55  Q
    |||||||||||||| |||||||||||||  ||| | |||||||||||||| ||||    
T  43079476 tttaaaatctcacataatcaatacaatctcacacagtcttttaaaatcttaaaga 43079530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 7027899 - 7027952
Alignment:
Q  2 ttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaaga 55  Q
    ||||||||||||| |||||||||||||  ||| | |||||||||||||| ||||    
T  7027899 ttaaaatctcacagaatcaatacaatctcacacagtcttttaaaatcttaaaga 7027952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 104
Target Start/End: Complemental strand, 15283633 - 15283596
Alignment:
Q  67 aaaacagtcttttaaaatctcaatccaatacacccccc 104  Q
    |||||| |||||||||||| ||||||||||||||||||    
T  15283633 aaaacaatcttttaaaatcccaatccaatacacccccc 15283596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 20156682 - 20156630
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaa 53  Q
    |||||||||  ||||| |||||| ||||  |||||||||||||||||||||||    
T  20156682 tttaaaatccaacaaagtcaatataatctcacaaaatcttttaaaatcttcaa 20156630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 33)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 9458492 - 9458598
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||        |||||||||||||||||||||||||||||||||||||    
T  9458492 tttaaaatcccacaaaatcaatacaatccaacaaagtcttttaaaatcttcaagattttttctatcaaaacagtcttttaaaatctcaatccaatacacc 9458591  T
Q  101 cccctaa 107  Q
    |||||||    
T  9458592 cccctaa 9458598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 40264376 - 40264270
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||        |||||||||||||||||||||||||||||||||||||    
T  40264376 tttaaaatcccacaaaatcaatacaatccaacaaagtcttttaaaatcttcaagattttttctatcaaaacagtcttttaaaatctcaatccaatacacc 40264277  T
Q  101 cccctaa 107  Q
    |||||||    
T  40264276 cccctaa 40264270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 7149019 - 7149123
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||        |||||||||||||||||||||||||||||||||||||    
T  7149019 tttaaaatcccacaaaatcaatacaatccaacaaagtcttttaaaatcttcaagattttttctatcaaaacagtcttttaaaatctcaatccaatacacc 7149118  T
Q  101 cccct 105  Q
    |||||    
T  7149119 cccct 7149123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 4656061 - 4656163
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||        |||||||||||||||||||||||||||||||||||||    
T  4656061 tttaaaatcccacaaaatcaatacaatccaacaaagtcttttaaaatcttcaagattttttctatcaaaacagtcttttaaaatctcaatccaatacacc 4656160  T
Q  101 ccc 103  Q
    |||    
T  4656161 ccc 4656163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 10795476 - 10795379
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaataca 98  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||        |||||||||||||||||||||||||||||||||||    
T  10795476 tttaaaatcccacaaaatcaatacaatccaacaaagtcttttaaaatcttcaagattttttctatcaaaacagtcttttaaaatctcaatccaataca 10795379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 41385971 - 41385869
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    ||||||||| |||||||| |||||||||||||||| ||||||||||||||||| |        |||||||||||||||||||||||||||||||||||||    
T  41385971 tttaaaatcccacaaaattaatacaatccaacaaagtcttttaaaatcttcaaaaaaatttctatcaaaacagtcttttaaaatctcaatccaatacacc 41385872  T
Q  101 ccc 103  Q
    |||    
T  41385871 ccc 41385869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 43604476 - 43604382
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaat 95  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||        ||||||||||||||||||||||||||||||||    
T  43604476 tttaaaatcccacaaaatcaatacaatccaacaaagtcttttaaaatcttcaagattttttctatcaaaacagtcttttaaaatctcaatccaat 43604382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 42275929 - 42276024
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaata 96  Q
    ||||||||  ||||||||||||||||||||||||| |||||||||||||||||||        |||||||||||||||||||||||||||| ||||    
T  42275929 tttaaaattccacaaaatcaatacaatccaacaaagtcttttaaaatcttcaagattttttctatcaaaacagtcttttaaaatctcaatctaata 42276024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 1605901 - 1605804
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaataca 98  Q
    ||||||||| |||||||||||||||||||  |||| |||||||||||||||||||        ||||||||||| |||||||||||||||||||||||    
T  1605901 tttaaaatcccacaaaatcaatacaatcctgcaaagtcttttaaaatcttcaagattttttctatcaaaacagtattttaaaatctcaatccaataca 1605804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 43489905 - 43489959
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaaga 55  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  43489905 tttaaaatcccacaaaatcaatacaatccaacaaagtcttttaaaatcttcaaga 43489959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 39371266 - 39371185
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaa 82  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |        |||||||||||||||||||    
T  39371266 tttaaaatcccacaaaatcaatacaatccaacaaagtcttttaaaatcttcaaaaaaatttctatcaaaacagtcttttaaa 39371185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 37566605 - 37566514
Alignment:
Q  18 tcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacccccctaagt 109  Q
    |||||||| |||  || |||||||||||||||||||||         |||||| ||||||||||||||||||||||||||||||||||||||    
T  37566605 tcaatacattcctccacaatcttttaaaatcttcaagactttttttgtcaaaatagtcttttaaaatctcaatccaatacacccccctaagt 37566514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 2113773 - 2113821
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatct 49  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  2113773 tttaaaatcccacaaaatcaatacaatccaacaaagtcttttaaaatct 2113821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 14781349 - 14781245
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    |||||||||||||| |||||||||||||  ||| | |||||||||||||| ||||        || |||| ||||||||||||||  |||||||||||||    
T  14781349 tttaaaatctcacagaatcaatacaatctcacacagtcttttaaaatcttaaagactttttttattaaaatagtcttttaaaatcctaatccaatacacc 14781250  T
Q  101 cccct 105  Q
    |||||    
T  14781249 cccct 14781245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 18957935 - 18957833
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    |||||||||||||| |||||||||||||  ||| | |||||||||||||| ||||        || |||| ||||||||||||||  |||||||||||||    
T  18957935 tttaaaatctcacagaatcaatacaatctcacacagtcttttaaaatcttaaagactttttttattaaaatagtcttttaaaatcctaatccaatacacc 18957836  T
Q  101 ccc 103  Q
    |||    
T  18957835 ccc 18957833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 28620669 - 28620774
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    |||||||||||| |||||||||||||||  ||||||| |||||||||||| ||||          ||||||| ||||| ||||||||||| |||||||||    
T  28620669 tttaaaatctcaaaaaatcaatacaatcacacaaaattttttaaaatctttaagatttttttg-ccaaaacaatctttcaaaatctcaattcaatacacc 28620767  T
Q  101 cccctaa 107  Q
    |||||||    
T  28620768 cccctaa 28620774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 35143071 - 35143173
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    ||||||||||||||||||||||||||||  ||| | |||||||||||||  ||||        ||||||| ||||||||| ||||| ||||||||||| |    
T  35143071 tttaaaatctcacaaaatcaatacaatcttacagagtcttttaaaatctcaaagatttcttttatcaaaatagtcttttacaatcttaatccaatacatc 35143170  T
Q  101 ccc 103  Q
    |||    
T  35143171 ccc 35143173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 18305178 - 18305074
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    |||||||||||||| |||||||||||||  ||| | |||||||||||||| ||||        || ||||  |||||||||||||  |||||||||||||    
T  18305178 tttaaaatctcacagaatcaatacaatctcacacagtcttttaaaatcttaaagactttttttattaaaattgtcttttaaaatcctaatccaatacacc 18305079  T
Q  101 cccct 105  Q
    |||||    
T  18305078 cccct 18305074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 38806025 - 38805929
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatac 97  Q
    |||||||||||| | |||||||||||||| | ||| |||||||||||||  ||||        | ||||| ||||||||||||||||||||||||||    
T  38806025 tttaaaatctcatagaatcaatacaatcctaaaaagtcttttaaaatctcaaagactttttctaccaaaatagtcttttaaaatctcaatccaatac 38805929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 44724998 - 44724898
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    |||||||||||||| |||||||||||||  ||| | |||||||||||||| ||||        || |||| ||||||||||||||  |||||||||||||    
T  44724998 tttaaaatctcacagaatcaatacaatctcacacagtcttttaaaatcttaaagactttttttattaaaatagtcttttaaaatcctaatccaatacacc 44724899  T
Q  101 c 101  Q
    |    
T  44724898 c 44724898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 98
Target Start/End: Original strand, 17791584 - 17791651
Alignment:
Q  31 acaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaataca 98  Q
    |||||||||||||||||||| ||||        ||||||| |||||||||||||||||||||||||||    
T  17791584 acaaaatcttttaaaatctttaagacattttcaatcaaaatagtcttttaaaatctcaatccaataca 17791651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 102
Target Start/End: Complemental strand, 30381889 - 30381822
Alignment:
Q  35 aatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacccc 102  Q
    |||||||||||||||||||||         |||||| |||||||||||||||||||||||||||||||    
T  30381889 aatcttttaaaatcttcaagactttttttgtcaaaatagtcttttaaaatctcaatccaatacacccc 30381822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 16365270 - 16365324
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaaga 55  Q
    |||||||||||||| |||||||||||||  ||||| |||||||||||||| ||||    
T  16365270 tttaaaatctcacagaatcaatacaatcgcacaaagtcttttaaaatcttaaaga 16365324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 42304844 - 42304790
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaaga 55  Q
    ||||||||||||||||||||||||||||  ||| | |||||||||||||| ||||    
T  42304844 tttaaaatctcacaaaatcaatacaatctcacacagtcttttaaaatcttaaaga 42304790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 31626293 - 31626342
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatctt 50  Q
    |||||||||||||| |||||||||||||  ||| ||||||||||||||||    
T  31626293 tttaaaatctcacagaatcaatacaatctcacacaatcttttaaaatctt 31626342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 40012396 - 40012348
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatct 49  Q
    ||||||||||||||||||| ||||||||  ||||| |||||||||||||    
T  40012396 tttaaaatctcacaaaatcgatacaatctcacaaactcttttaaaatct 40012348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 9209895 - 9209946
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttca 52  Q
    |||||||||  |||||||||||| ||||  ||||||||||||||||||||||    
T  9209895 tttaaaatccaacaaaatcaatataatctcacaaaatcttttaaaatcttca 9209946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 4030545 - 4030491
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaaga 55  Q
    |||||||||||||| |||||||||||||  ||| | |||||||||||||| ||||    
T  4030545 tttaaaatctcacagaatcaatacaatctcacacagtcttttaaaatcttaaaga 4030491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 19717082 - 19717028
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaaga 55  Q
    |||||||||||||| |||||||||||||  ||| | |||||||||||||| ||||    
T  19717082 tttaaaatctcacagaatcaatacaatctcacacagtcttttaaaatcttaaaga 19717028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 20831181 - 20831127
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaaga 55  Q
    |||||||||||||| |||||||||||||  ||| | |||||||||||||| ||||    
T  20831181 tttaaaatctcacagaatcaatacaatctcacacagtcttttaaaatcttaaaga 20831127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 102
Target Start/End: Original strand, 42366945 - 42366983
Alignment:
Q  64 atcaaaacagtcttttaaaatctcaatccaatacacccc 102  Q
    ||||||| |||| ||||||||||||||||||||||||||    
T  42366945 atcaaaatagtcatttaaaatctcaatccaatacacccc 42366983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 5266842 - 5266793
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatctt 50  Q
    ||||||||| ||||||||||||| ||||  ||||| ||||||||||||||    
T  5266842 tttaaaatcccacaaaatcaatataatctcacaaagtcttttaaaatctt 5266793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 41964698 - 41964650
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatct 49  Q
    ||||||||| ||||||||||||| ||| ||||||| | |||||||||||    
T  41964698 tttaaaatcccacaaaatcaatataattcaacaaagttttttaaaatct 41964650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 11632787 - 11632681
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||        |||||||||||||||||||||||||||||||||||||    
T  11632787 tttaaaatcccacaaaatcaatacaatccaacaaagtcttttaaaatcttcaagattttttctatcaaaacagtcttttaaaatctcaatccaatacacc 11632688  T
Q  101 cccctaa 107  Q
    |||||||    
T  11632687 cccctaa 11632681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 10553540 - 10553439
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||        |||||||||||||||| ||||||||||||||||||||    
T  10553540 tttaaaatcccacaaaatcaatacaatccaacaaagtcttttaaaatcttcaagattttttctatcaaaacagtctttttaaatctcaatccaatacacc 10553441  T
Q  101 cc 102  Q
    ||    
T  10553440 cc 10553439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 10553721 - 10553818
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaataca 98  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||        |||||||||||||||||||||||||||||||||||    
T  10553721 tttaaaatcccacaaaatcaatacaatccaacaaagtcttttaaaatcttcaagattttttctatcaaaacagtcttttaaaatctcaatccaataca 10553818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 13949902 - 13949799
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    |||| |||| ||||||||||||||||||||||||| |||||||||||||||||||        ||||||||||||||||||||||||||||||||||| |    
T  13949902 tttataatcccacaaaatcaatacaatccaacaaagtcttttaaaatcttcaagattttttctatcaaaacagtcttttaaaatctcaatccaatacatc 13949803  T
Q  101 cccc 104  Q
    ||||    
T  13949802 cccc 13949799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 40411402 - 40411505
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaaga-nnnnnnnnatcaaaacagtcttttaaaatctcaatccaatacac 99  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||         ||||||||||||||||||||||||||||||||||||    
T  40411402 tttaaaatcccacaaaatcaatacaatccaacaaagtcttttaaaatcttcaagatttttttctatcaaaacagtcttttaaaatctcaatccaatacac 40411501  T
Q  100 cccc 103  Q
    ||||    
T  40411502 cccc 40411505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 18677032 - 18676939
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaa 94  Q
    ||||||||| |||||||||| |||||| |||||||||||||||||||||||||||        ||||||| |||||||||||||||||||||||    
T  18677032 tttaaaatcccacaaaatcactacaatacaacaaaatcttttaaaatcttcaagattttttctatcaaaatagtcttttaaaatctcaatccaa 18676939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 3603561 - 3603458
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    ||||||||  ||||||||||||||||||||||||| ||||||||||||||||| |        ||||||||||||||||||||| |||||| ||||| ||    
T  3603561 tttaaaattccacaaaatcaatacaatccaacaaagtcttttaaaatcttcaaaaaaatttctatcaaaacagtcttttaaaatttcaatctaatacccc 3603462  T
Q  101 cccc 104  Q
    ||||    
T  3603461 cccc 3603458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 13717088 - 13717189
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    ||||||||||||||||||||||||||||  ||| |||||||||||||||| ||||        || |||| ||||||||||||||  |||||||||||||    
T  13717088 tttaaaatctcacaaaatcaatacaatctcacacaatcttttaaaatcttaaagactttttttattaaaatagtcttttaaaatcctaatccaatacacc 13717187  T
Q  101 cc 102  Q
    ||    
T  13717188 cc 13717189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 26629613 - 26629511
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    |||||||||||| | | ||  |||||||| ||||||||||||||||| |||||||        ||||||| ||||||||||||||||||||||||||| |    
T  26629613 tttaaaatctcatagagtctttacaatcctacaaaatcttttaaaattttcaagactttttcaatcaaaatagtcttttaaaatctcaatccaatacagc 26629514  T
Q  101 ccc 103  Q
    |||    
T  26629513 ccc 26629511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 1151501 - 1151447
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaaga 55  Q
    |||||||||||||| |||||||||||||  ||| |||||||||||||||| ||||    
T  1151501 tttaaaatctcacagaatcaatacaatctcacacaatcttttaaaatcttaaaga 1151447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 4549467 - 4549413
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaaga 55  Q
    |||||||||||||| |||||||||||||  ||| |||||||||||||||| ||||    
T  4549467 tttaaaatctcacagaatcaatacaatctcacacaatcttttaaaatcttaaaga 4549413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 13999316 - 13999211
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaaga-nnnnnnnnatcaaaacagtcttttaaaatctcaatccaatacac 99  Q
    |||||||||||||| |||||||||||||  ||| | |||||||||||||| ||||         || |||| ||||||||||||||  ||||||||||||    
T  13999316 tttaaaatctcacagaatcaatacaatctcacacagtcttttaaaatcttaaagacttttttttattaaaatagtcttttaaaatcctaatccaatacac 13999217  T
Q  100 ccccct 105  Q
    ||||||    
T  13999216 ccccct 13999211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 40012919 - 40012814
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaaga-nnnnnnnnatcaaaacagtcttttaaaatctcaatccaatacac 99  Q
    ||||||||||||||||||||||||||||  |||   |||||||||||||| ||||         || |||| ||||||||||||||  ||||||||||||    
T  40012919 tttaaaatctcacaaaatcaatacaatctcacactgtcttttaaaatcttaaagacttttttttattaaaatagtcttttaaaatcctaatccaatacac 40012820  T
Q  100 ccccct 105  Q
    ||||||    
T  40012819 ccccct 40012814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 39853345 - 39853449
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    |||||||||||||| |||||||||||||  ||| | |||||||||||||  ||||        || |||| |||||||||||||   |||||||||||||    
T  39853345 tttaaaatctcacagaatcaatacaatctcacagagtcttttaaaatctaaaagactttttatattaaaatagtcttttaaaattctaatccaatacacc 39853444  T
Q  101 cccct 105  Q
    |||||    
T  39853445 cccct 39853449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 1459397 - 1459343
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaaga 55  Q
    |||||||||||||| |||||||||||||  ||| | |||||||||||||| ||||    
T  1459397 tttaaaatctcacataatcaatacaatctcacacagtcttttaaaatcttaaaga 1459343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 103
Target Start/End: Complemental strand, 6827989 - 6827951
Alignment:
Q  65 tcaaaacagtcttttaaaatctcaatccaatacaccccc 103  Q
    |||||| | ||||||||||||||||||||||||||||||    
T  6827989 tcaaaataatcttttaaaatctcaatccaatacaccccc 6827951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 5950111 - 5950160
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatctt 50  Q
    |||||||||||||| |||||||||||||  ||| ||| ||||||||||||    
T  5950111 tttaaaatctcacagaatcaatacaatctcacataatattttaaaatctt 5950160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 20548 - 20443
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||        |||||||||||||||||||||||||||||||||||||    
T  20548 tttaaaatcccacaaaatcaatacaatccaacaaagtcttttaaaatcttcaagattttttctatcaaaacagtcttttaaaatctcaatccaatacacc 20449  T
Q  101 ccccta 106  Q
    ||||||    
T  20448 ccccta 20443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 80894 - 80785
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||        ||||||| |||||||||||||||||||||||||||||    
T  80894 tttaaaatcccacaaaatcaatacaatccaacaaagtcttttaaaatcttcaagattttttctatcaaaaaagtcttttaaaatctcaatccaatacacc 80795  T
Q  101 cccctaagtc 110  Q
    ||||||||||    
T  80794 cccctaagtc 80785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 105
Target Start/End: Original strand, 81842 - 81870
Alignment:
Q  77 tttaaaatctcaatccaatacacccccct 105  Q
    |||||||||||||||||||||||||||||    
T  81842 tttaaaatctcaatccaatacacccccct 81870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 4e-34; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 29864853 - 29864748
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||        |||||||||||||||||||||||||||||||||||||    
T  29864853 tttaaaatcccacaaaatcaatacaatccaacaaagtcttttaaaatcttcaagattttttctatcaaaacagtcttttaaaatctcaatccaatacacc 29864754  T
Q  101 ccccta 106  Q
    ||||||    
T  29864753 ccccta 29864748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 3109451 - 3109349
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||        |||||||||||||||||||||||||||||||||||||    
T  3109451 tttaaaatcccacaaaatcaatacaatccaacaaagtcttttaaaatcttcaagattttttctatcaaaacagtcttttaaaatctcaatccaatacacc 3109352  T
Q  101 ccc 103  Q
    |||    
T  3109351 ccc 3109349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 6475844 - 6475743
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||        ||||||||||||||||||||||||||| |||||||||    
T  6475844 tttaaaatcccacaaaatcaatacaatccaacaaagtcttttaaaatcttcaagattttttctatcaaaacagtcttttaaaatctcaattcaatacacc 6475745  T
Q  101 cc 102  Q
    ||    
T  6475744 cc 6475743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 7104517 - 7104621
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    |||||||||||||| |||||||||||||| ||||| |||||||||||||| ||||         | |||| ||||||||||||||  |||||||||||||    
T  7104517 tttaaaatctcacagaatcaatacaatcccacaaagtcttttaaaatcttaaagactttttttgttaaaaaagtcttttaaaatcctaatccaatacacc 7104616  T
Q  101 cccct 105  Q
    |||||    
T  7104617 cccct 7104621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 8790113 - 8790009
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    |||||||||||||| |||||||||||||| ||||| |||||||||||||| ||||         | |||| ||||||||||||||  |||||||||||||    
T  8790113 tttaaaatctcacagaatcaatacaatcccacaaagtcttttaaaatcttaaagactttttttgttaaaaaagtcttttaaaatcctaatccaatacacc 8790014  T
Q  101 cccct 105  Q
    |||||    
T  8790013 cccct 8790009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 31068413 - 31068519
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    |||||||| ||||| |||||||||||||  ||| | |||||||||||||| ||||        || |||| ||||||||||||||  |||||||||||||    
T  31068413 tttaaaatatcacagaatcaatacaatctcacacagtcttttaaaatcttaaagactttttttattaaaatagtcttttaaaatcctaatccaatacacc 31068512  T
Q  101 cccctaa 107  Q
    |||||||    
T  31068513 cccctaa 31068519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 30384273 - 30384170
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    |||||||||||||| |||||||||||||  ||| | |||||||||||||| |||         || |||| ||||||||||||||  |||||||||||||    
T  30384273 tttaaaatctcacagaatcaatacaatctcacacagtcttttaaaatcttaaaggctttttttattaaaatagtcttttaaaatcctaatccaatacacc 30384174  T
Q  101 cccc 104  Q
    ||||    
T  30384173 cccc 30384170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 7498083 - 7498137
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaaga 55  Q
    |||||||||||||| |||||||||||||  ||| |||||||||||||||| ||||    
T  7498083 tttaaaatctcacagaatcaatacaatctcacacaatcttttaaaatcttaaaga 7498137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 103
Target Start/End: Complemental strand, 10008411 - 10008374
Alignment:
Q  66 caaaacagtcttttaaaatctcaatccaatacaccccc 103  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  10008411 caaaatagtcttttaaaatctcaatccaatacaccccc 10008374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 14261652 - 14261552
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    |||||||||||||| |||||||||||||  ||| | |||||||||||||| ||||        || ||||  |||||||||||||  |||||||||||||    
T  14261652 tttaaaatctcacagaatcaatacaatctcacacagtcttttaaaatcttaaagactttttttattaaaattgtcttttaaaatcataatccaatacacc 14261553  T
Q  101 c 101  Q
    |    
T  14261552 c 14261552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 101
Target Start/End: Original strand, 35165690 - 35165725
Alignment:
Q  66 caaaacagtcttttaaaatctcaatccaatacaccc 101  Q
    ||||| ||||||||||||||||||||||||||||||    
T  35165690 caaaatagtcttttaaaatctcaatccaatacaccc 35165725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 34774378 - 34774432
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaaga 55  Q
    |||||||||||||| |||||||||||||  ||| | |||||||||||||| ||||    
T  34774378 tttaaaatctcacagaatcaatacaatcttacacagtcttttaaaatcttaaaga 34774432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 4199689 - 4199640
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatctt 50  Q
    |||||||||||||| |||||||||||||  ||| | ||||||||||||||    
T  4199689 tttaaaatctcacagaatcaatacaatctcacacagtcttttaaaatctt 4199640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 101
Target Start/End: Original strand, 5958074 - 5958103
Alignment:
Q  72 agtcttttaaaatctcaatccaatacaccc 101  Q
    ||||||||||||||||||||||||||||||    
T  5958074 agtcttttaaaatctcaatccaatacaccc 5958103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 42315867 - 42315971
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||        |||||||||||||||||||||||||||||||||||||    
T  42315867 tttaaaatcccacaaaatcaatacaatccaacaaagtcttttaaaatcttcaagattttttctatcaaaacagtcttttaaaatctcaatccaatacacc 42315966  T
Q  101 cccct 105  Q
    |||||    
T  42315967 cccct 42315971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 7808983 - 7809085
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    |||||||||  |||||||||||||||||||||||| |||||||||||||||||||        |||||| ||||||||||||||||||||||||||||||    
T  7808983 tttaaaatcctacaaaatcaatacaatccaacaaagtcttttaaaatcttcaagattttttctatcaaaccagtcttttaaaatctcaatccaatacacc 7809082  T
Q  101 ccc 103  Q
    |||    
T  7809083 ccc 7809085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 7820934 - 7821036
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    |||||||||  |||||||||||||||||||||||| |||||||||||||||||||        |||||| ||||||||||||||||||||||||||||||    
T  7820934 tttaaaatcctacaaaatcaatacaatccaacaaagtcttttaaaatcttcaagaatttttctatcaaatcagtcttttaaaatctcaatccaatacacc 7821033  T
Q  101 ccc 103  Q
    |||    
T  7821034 ccc 7821036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 8583102 - 8583008
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaat 95  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||        ||||||||||||||||||||||||||||||||    
T  8583102 tttaaaatcccacaaaatcaatacaatccaacaaagtcttttaaaatcttcaagattttttctatcaaaacagtcttttaaaatctcaatccaat 8583008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 42217548 - 42217448
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    ||||||||| ||||||||||||||||||||||||| || ||||||||||||||||        |||||||||||||||||||||||||||| ||||||||    
T  42217548 tttaaaatcccacaaaatcaatacaatccaacaaagtc-tttaaaatcttcaagattttttctatcaaaacagtcttttaaaatctcaatcaaatacacc 42217450  T
Q  101 cc 102  Q
    ||    
T  42217449 cc 42217448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 116 - 211
Target Start/End: Original strand, 37559937 - 37560032
Alignment:
Q  116 tggtgtgggaagtaatttcttcctccgttggtgaaatcagaatgttgattatcttgttcctaccgttttgtacatattttgcctattgacattgaa 211  Q
    ||||||| |||||  |||||||||||  | ||||||||  |||| ||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  37559937 tggtgtgcgaagtgctttcttcctccactagtgaaatccaaatgctgattatcttgttcctacaattttgtacatattttgcctattgacattgaa 37560032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 3434928 - 3434832
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatac 97  Q
    ||||||||  ||||||||||||||||||||||||| |||||||||||||||||||        || |||| ||||||||||||||||||| ||||||    
T  3434928 tttaaaattccacaaaatcaatacaatccaacaaagtcttttaaaatcttcaagattttttctattaaaatagtcttttaaaatctcaattcaatac 3434832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 102
Target Start/End: Original strand, 56399028 - 56399125
Alignment:
Q  4 aaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacccc 102  Q
    |||||||||||||||||||| ||| ||||||| ||||||||||||||||| |        |||||||| |||||||||||||||||| |||||||||||    
T  56399028 aaaatctcacaaaatcaataaaattcaacaaagtcttttaaaatcttcaa-aaaatttctatcaaaacggtcttttaaaatctcaattcaatacacccc 56399125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 38234596 - 38234702
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    |||||||||| ||| |||||||||||||| ||||| |||||||||||||| ||||         | |||| ||||||||||||||  |||||||||||||    
T  38234596 tttaaaatcttacagaatcaatacaatcccacaaagtcttttaaaatcttaaagactttttttgttaaaaaagtcttttaaaatcctaatccaatacacc 38234695  T
Q  101 cccctaa 107  Q
    |||||||    
T  38234696 cccctaa 38234702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 108
Target Start/End: Original strand, 47686840 - 47686913
Alignment:
Q  35 aatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacccccctaag 108  Q
    ||||||| |||||||||||||        ||||||| |||||||||||||||||||||||||||||||||||||    
T  47686840 aatctttcaaaatcttcaagactttttttatcaaaatagtcttttaaaatctcaatccaatacacccccctaag 47686913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 27769057 - 27769161
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    |||||||||||||| |||||||||||||  ||| | |||||||||||||| ||||        || |||| ||||||||||||||  |||||||||||||    
T  27769057 tttaaaatctcacagaatcaatacaatctcacacagtcttttaaaatcttaaagactttttttattaaaatagtcttttaaaatcctaatccaatacacc 27769156  T
Q  101 cccct 105  Q
    |||||    
T  27769157 cccct 27769161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 102
Target Start/End: Original strand, 44930623 - 44930695
Alignment:
Q  30 aacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacccc 102  Q
    |||||| |||||||||||||| ||||        |||||||||||||||||||||||||||||||||||||||    
T  44930623 aacaaagtcttttaaaatctttaagattttttttatcaaaacagtcttttaaaatctcaatccaatacacccc 44930695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 32683236 - 32683134
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    |||||||||||||| |||||||||||||  ||| | |||||||||||||| ||||        || |||| ||||||||||||||  |||||||||||||    
T  32683236 tttaaaatctcacagaatcaatacaatctcacacagtcttttaaaatcttaaagactttttttattaaaatagtcttttaaaatcctaatccaatacacc 32683137  T
Q  101 ccc 103  Q
    |||    
T  32683136 ccc 32683134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 49834074 - 49834020
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaaga 55  Q
    ||||||||||||||||||||||||||||  ||| |||||||||||||||| ||||    
T  49834074 tttaaaatctcacaaaatcaatacaatctcacataatcttttaaaatcttaaaga 49834020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 52110245 - 52110299
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaaga 55  Q
    |||||||||||| |||||||||||||||  |||||||||||||||||||| ||||    
T  52110245 tttaaaatctcaaaaaatcaatacaatcgcacaaaatcttttaaaatctttaaga 52110299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 65 - 107
Target Start/End: Original strand, 54510609 - 54510651
Alignment:
Q  65 tcaaaacagtcttttaaaatctcaatccaatacacccccctaa 107  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  54510609 tcaaaatagtcttttaaaatctcaatccaatacacccccctaa 54510651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 23988190 - 23988291
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    |||||||||||||| |||||||||||||  ||| | |||||||||||||| ||||        || |||| ||||||||||||||  |||||||||||||    
T  23988190 tttaaaatctcacagaatcaatacaatctcacatattcttttaaaatcttaaagattttttttattaaaatagtcttttaaaatcctaatccaatacacc 23988289  T
Q  101 cc 102  Q
    ||    
T  23988290 cc 23988291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 103
Target Start/End: Complemental strand, 28846208 - 28846169
Alignment:
Q  64 atcaaaacagtcttttaaaatctcaatccaatacaccccc 103  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  28846208 atcaaaatagtcttttaaaatctcaatccaatacaccccc 28846169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 41726099 - 41726198
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    |||||||||||||| |||||||||||||  | | |||||||||||||||| ||||        || |||| ||||||||||||||  |||||||||||||    
T  41726099 tttaaaatctcacataatcaatacaatctcaaacaatcttttaaaatcttaaagacattttttattaaaatagtcttttaaaatcataatccaatacacc 41726198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 54342140 - 54342247
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    |||||||||||||| |||||||||||||  ||| | |||||||||||||| ||||        || |||| |||||||||||||   |||||||||||||    
T  54342140 tttaaaatctcacagaatcaatacaatctcacacagtcttttaaaatcttaaagactttttttattaaaatagtcttttaaaattctaatccaatacacc 54342239  T
Q  101 cccctaag 108  Q
    ||| ||||    
T  54342240 cccttaag 54342247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 65 - 103
Target Start/End: Complemental strand, 388654 - 388616
Alignment:
Q  65 tcaaaacagtcttttaaaatctcaatccaatacaccccc 103  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  388654 tcaaaatagtcttttaaaatctcaatccaatacaccccc 388616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 32323062 - 32323116
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaaga 55  Q
    |||||||||||||| |||||||||||||  ||| |||||||||||||||| ||||    
T  32323062 tttaaaatctcacagaatcaatacaatctcacacaatcttttaaaatcttaaaga 32323116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 48532022 - 48531968
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaaga 55  Q
    |||||||||||||| |||||||||||||  ||| |||||||||||||||| ||||    
T  48532022 tttaaaatctcacagaatcaatacaatcttacagaatcttttaaaatcttaaaga 48531968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 105
Target Start/End: Original strand, 5117866 - 5117906
Alignment:
Q  65 tcaaaacagtcttttaaaatctcaatccaatacacccccct 105  Q
    |||||| |||||||||||||||||||||||||||| |||||    
T  5117866 tcaaaatagtcttttaaaatctcaatccaatacactcccct 5117906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 28484865 - 28484911
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaat 47  Q
    |||||||||||||||||||||||||||   ||| |||||||||||||    
T  28484865 tttaaaatctcacaaaatcaatacaatttcacacaatcttttaaaat 28484911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 99
Target Start/End: Complemental strand, 10600676 - 10600643
Alignment:
Q  66 caaaacagtcttttaaaatctcaatccaatacac 99  Q
    |||||||||||||||||||||| |||||||||||    
T  10600676 caaaacagtcttttaaaatctcgatccaatacac 10600643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 103
Target Start/End: Complemental strand, 44929904 - 44929875
Alignment:
Q  74 tcttttaaaatctcaatccaatacaccccc 103  Q
    ||||||||||||||||||||||||||||||    
T  44929904 tcttttaaaatctcaatccaatacaccccc 44929875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 5801698 - 5801746
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatct 49  Q
    |||||||||||||| |||||||||||||  ||| | |||||||||||||    
T  5801698 tttaaaatctcacagaatcaatacaatctcacacagtcttttaaaatct 5801746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 109
Target Start/End: Complemental strand, 31314448 - 31314416
Alignment:
Q  77 tttaaaatctcaatccaatacacccccctaagt 109  Q
    |||||||||| ||||||||||||||||||||||    
T  31314448 tttaaaatcttaatccaatacacccccctaagt 31314416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 53272832 - 53272880
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatct 49  Q
    |||||||||||| |||||||||| ||||  ||||| |||||||||||||    
T  53272832 tttaaaatctcataaaatcaatagaatcacacaaagtcttttaaaatct 53272880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 33926 - 33824
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||        ||||||| |||||||||||||||||||||||||||||    
T  33926 tttaaaatcccacaaaatcaatacaatccaacaaagtcttttaaaatcttcaagattttttctatcaaaaaagtcttttaaaatctcaatccaatacacc 33827  T
Q  101 ccc 103  Q
    |||    
T  33826 ccc 33824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 14389407 - 14389509
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |        |||||||||||||||||||||||||||||||||||||    
T  14389407 tttaaaatcccacaaaatcaatacaatccaacaaagtcttttaaaatcttcaaaaaaatttctatcaaaacagtcttttaaaatctcaatccaatacacc 14389506  T
Q  101 ccc 103  Q
    |||    
T  14389507 ccc 14389509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 45319460 - 45319562
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    ||||||||| | ||||||||||||||||||||||| |||||||||||||||||||        |||||||||||||||||||||||||||||||||||||    
T  45319460 tttaaaatcccgcaaaatcaatacaatccaacaaagtcttttaaaatcttcaagattttttctatcaaaacagtcttttaaaatctcaatccaatacacc 45319559  T
Q  101 ccc 103  Q
    |||    
T  45319560 ccc 45319562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 45535742 - 45535840
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacac 99  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||        ||||||||||||||||||||||||||||||||||||    
T  45535742 tttaaaatcccacaaaatcaatacaatccaacaaaatcttctaaaatcttcaagattttttctatcaaaacagtcttttaaaatctcaatccaatacac 45535840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 52706373 - 52706475
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||        ||||||||| |||||||||||||||||||||||||||    
T  52706373 tttaaaatcccacaaaatcaatacaatccaacaaagtcttttaaaatcttcaagattttttctatcaaaacattcttttaaaatctcaatccaatacacc 52706472  T
Q  101 ccc 103  Q
    |||    
T  52706473 ccc 52706475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 26881917 - 26881820
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaataca 98  Q
    ||||||||| ||||||||||||||||||||||||| |||| ||||||||| ||||        ||||||| |||||||||||||||||||||||||||    
T  26881917 tttaaaatcccacaaaatcaatacaatccaacaaagtcttctaaaatctttaagattttttctatcaaaatagtcttttaaaatctcaatccaataca 26881820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 48198940 - 48199044
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    |||||||||||||| |||||||||||||| ||||| |||||||||||||| ||||         | |||| ||||||||||||||  |||||||||||||    
T  48198940 tttaaaatctcacagaatcaatacaatcccacaaagtcttttaaaatcttaaagactttttttgttaaaaaagtcttttaaaatcctaatccaatacacc 48199039  T
Q  101 cccct 105  Q
    |||||    
T  48199040 cccct 48199044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 48207523 - 48207627
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    |||||||||||||| |||||||||||||| ||||| |||||||||||||| ||||         | |||| ||||||||||||||  |||||||||||||    
T  48207523 tttaaaatctcacagaatcaatacaatcccacaaagtcttttaaaatcttaaagactttttttgttaaaaaagtcttttaaaatcctaatccaatacacc 48207622  T
Q  101 cccct 105  Q
    |||||    
T  48207623 cccct 48207627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 39758868 - 39758922
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaaga 55  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||    
T  39758868 tttaaaatcccacaaaatcaatacaatccaacaaagtcttttaaaatctgcaaga 39758922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 39764222 - 39764276
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaaga 55  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||    
T  39764222 tttaaaatcccacaaaatcaatacaatccaacaaagtcttttaaaatctgcaaga 39764276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 6313569 - 6313673
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    |||||||||||||| |||||||||||||  ||| | |||||||||||||| ||||        || |||| ||||||||||||||  |||||||||||||    
T  6313569 tttaaaatctcacagaatcaatacaatctcacacagtcttttaaaatcttaaagactttttttattaaaatagtcttttaaaatcctaatccaatacacc 6313668  T
Q  101 cccct 105  Q
    |||||    
T  6313669 cccct 6313673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 25613085 - 25613188
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    |||||||||||||| |||||||||||||  ||| | |||||||||||||| ||||        || |||| ||||||||||||||  |||||||||||||    
T  25613085 tttaaaatctcacagaatcaatacaatctcacacagtcttttaaaatcttaaagactttttttattaaaatagtcttttaaaatcctaatccaatacacc 25613184  T
Q  101 cccc 104  Q
    ||||    
T  25613185 cccc 25613188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 29395639 - 29395537
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    |||||||||||||| |||||||||||||  ||| | |||||||||||||| ||||        || |||| ||||||||||||||  |||||||||||||    
T  29395639 tttaaaatctcacagaatcaatacaatctcacacagtcttttaaaatcttaaagactttttttattaaaatagtcttttaaaatcctaatccaatacacc 29395540  T
Q  101 ccc 103  Q
    |||    
T  29395539 ccc 29395537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 104
Target Start/End: Original strand, 36403103 - 36403172
Alignment:
Q  35 aatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacccccc 104  Q
    |||||||||||||||||||||         |||||| |||||||||||||||||||||||||||||||||    
T  36403103 aatcttttaaaatcttcaagactttttttgtcaaaatagtcttttaaaatctcaatccaatacacccccc 36403172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 28386660 - 28386552
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaaga-nnnnnnnnatcaaaacagtcttttaaaatctcaatccaatacac 99  Q
    ||||||||||||||||||||||| ||||  ||| | |||||||||||||| ||||         || |||| ||||||||||||||  ||||||||||||    
T  28386660 tttaaaatctcacaaaatcaatagaatctcacacagtcttttaaaatcttaaagacttttttttattaaaatagtcttttaaaatcctaatccaatacac 28386561  T
Q  100 ccccctaag 108  Q
    |||||||||    
T  28386560 ccccctaag 28386552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 65 - 103
Target Start/End: Original strand, 10897691 - 10897729
Alignment:
Q  65 tcaaaacagtcttttaaaatctcaatccaatacaccccc 103  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  10897691 tcaaaatagtcttttaaaatctcaatccaatacaccccc 10897729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 20111783 - 20111681
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    |||||||||||||| ||||| |||||||  ||||| |||||||||||||| ||||        || |||| ||||||||||||||  |||| ||||||||    
T  20111783 tttaaaatctcacagaatcagtacaatctcacaaagtcttttaaaatcttaaagactttttttattaaaatagtcttttaaaatcgtaatcaaatacacc 20111684  T
Q  101 ccc 103  Q
    |||    
T  20111683 ccc 20111681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 65 - 107
Target Start/End: Complemental strand, 33242498 - 33242456
Alignment:
Q  65 tcaaaacagtcttttaaaatctcaatccaatacacccccctaa 107  Q
    |||||| ||||||||||||||||||| ||||||||||||||||    
T  33242498 tcaaaatagtcttttaaaatctcaatgcaatacacccccctaa 33242456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 51702587 - 51702689
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    |||||||||||||| |||||||||||||  ||| | |||||||||||||| ||||        || |||| ||||||||||||||  ||||| |||||||    
T  51702587 tttaaaatctcacagaatcaatacaatctcacacagtcttttaaaatcttaaagactttttttattaaaatagtcttttaaaatcctaatcctatacacc 51702686  T
Q  101 ccc 103  Q
    |||    
T  51702687 ccc 51702689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 1923470 - 1923373
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaataca 98  Q
    |||||||||  ||||| |||||| ||||  |||||||||||||||||||||||||          ||||| | |||||||||||||||||||||||||    
T  1923470 tttaaaatccaacaaagtcaatataatctcacaaaatcttttaaaatcttcaagattttgtttgccaaaataatcttttaaaatctcaatccaataca 1923373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 49231977 - 49232078
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    |||||||||||||| |||||||||||||  ||| | |||||||||||||| ||||        || ||||  |||||||||||||  |||||||||||||    
T  49231977 tttaaaatctcacagaatcaatacaatctcacacagtcttttaaaatcttaaagactttttttattaaaattgtcttttaaaatcctaatccaatacacc 49232076  T
Q  101 cc 102  Q
    ||    
T  49232077 cc 49232078  T

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Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 9321721 - 9321617
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaaga-nnnnnnnnatcaaaacagtcttttaaaatctcaatccaatacac 99  Q
    |||||||||||||| |||||||||||||  ||| | |||||||||||||| ||||         || |||| |||||||||||||| |||| ||||||||    
T  9321721 tttaaaatctcacagaatcaatacaatctcacacagtcttttaaaatcttaaagacttttttttattaaaatagtcttttaaaatcccaattcaatacac 9321622  T
Q  100 ccccc 104  Q
    |||||    
T  9321621 ccccc 9321617  T

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Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 19894809 - 19894863
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaaga 55  Q
    ||||||||  ||||||||||||| ||||  |||||||||||||||||||| ||||    
T  19894809 tttaaaattccacaaaatcaatataatcacacaaaatcttttaaaatctttaaga 19894863  T

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Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 29220105 - 29220159
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaaga 55  Q
    |||||||||||||| |||||||||||||  ||| | |||||||||||||| ||||    
T  29220105 tttaaaatctcacagaatcaatacaatctcacacagtcttttaaaatcttaaaga 29220159  T

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Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 51826062 - 51826008
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaaga 55  Q
    ||||||||  ||||||||||||||||||  ||||| |||||||||||||| ||||    
T  51826062 tttaaaatgccacaaaatcaatacaatcacacaaagtcttttaaaatctttaaga 51826008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 5494359 - 5494310
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatctt 50  Q
    |||||||||||||| |||||||||||||  ||| | ||||||||||||||    
T  5494359 tttaaaatctcacataatcaatacaatctcacagagtcttttaaaatctt 5494310  T

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Target: scaffold0472 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 1039 - 933
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    ||||||||| ||||||||||||||||||  |||||||||||||||||||| ||||          ||||||| ||||  |||||||||||||||||||||    
T  1039 tttaaaatcccacaaaatcaatacaatcacacaaaatcttttaaaatctttaagattttttttgccaaaacaatcttgcaaaatctcaatccaatacacc 940  T
Q  101 cccctaa 107  Q
    |||||||    
T  939 cccctaa 933  T

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Target: scaffold0042 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 57271 - 57166
Alignment:
Q  1 tttaaaatctcacaaaatcaatacaatccaacaaaatcttttaaaatcttcaagannnnnnnnatcaaaacagtcttttaaaatctcaatccaatacacc 100  Q
    |||||||||||||| |||||||||||||  ||| | |||||||||||||| | ||        || |||| |||||||||||||   |||||||||||||    
T  57271 tttaaaatctcacagaatcaatacaatctcacacagtcttttaaaatcttaaggactttttttattaaaatagtcttttaaaattctaatccaatacacc 57172  T
Q  101 ccccta 106  Q
    ||||||    
T  57171 ccccta 57166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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