View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11260_low_35 (Length: 218)
Name: NF11260_low_35
Description: NF11260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11260_low_35 |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 9e-97; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 20 - 202
Target Start/End: Original strand, 37957777 - 37957959
Alignment:
| Q |
20 |
gtaatgtcttcatctagaagttctgataagtattttcttcgtacatggtctagtccagctctttctatttcttgtttcacatttagaacgatgcttctgg |
119 |
Q |
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| T |
37957777 |
gtaatgtcttcatctagaagttctgataagtattttcttcgtacatggtctagtccagctctttcgatttcttgtttcacatttagaacgatgcttctgg |
37957876 |
T |
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| Q |
120 |
aactgaactgagttgcgagtttatgatagattgcactggcaattgttgttttgcctgtccctcccatgccccatattcctatg |
202 |
Q |
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| T |
37957877 |
aactgaactgagttgcgagtttatgatagattgcactggcaattgttgttttgcctgtccctcccatgccccatattcctatg |
37957959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 20 - 202
Target Start/End: Complemental strand, 37929810 - 37929628
Alignment:
| Q |
20 |
gtaatgtcttcatctagaagttctgataagtattttcttcgtacatggtctagtccagctctttctatttcttgtttcacatttagaacgatgcttctgg |
119 |
Q |
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| T |
37929810 |
gtaatgtcttcctctagaagttgtgataagtattttctttgtacatggcgtagtccagctctttctatttcttgttgagcatttagaatgatgcttttgg |
37929711 |
T |
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| Q |
120 |
aactgaactgagttgcgagtttatgatagattgcactggcaattgttgttttgcctgtccctcccatgccccatattcctatg |
202 |
Q |
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| T |
37929710 |
aactgaactgagttgagaattgatgatagattgcattggcaattgttgttttgcctatccctcccatgccccgtattcctatg |
37929628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 50 - 200
Target Start/End: Original strand, 44644620 - 44644770
Alignment:
| Q |
50 |
tattttcttcgtacatggtctagtccagctctttctatttcttgtttcacatttagaacgatgcttctggaactgaactgagttgcgagtttatgataga |
149 |
Q |
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| T |
44644620 |
tatttgctttgtatatggtgcagtccaaatctctctatttcttgttgaacatttaggatgatgctgttaaaactgaattgggttgccaatttgcgatata |
44644719 |
T |
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| Q |
150 |
ttgcactggcaattgttgttttgcctgtccctcccatgccccatattccta |
200 |
Q |
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| T |
44644720 |
ttgcactagcaattgttgttttccctattcctcccataccccagattccta |
44644770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 198
Target Start/End: Original strand, 34727847 - 34727887
Alignment:
| Q |
158 |
gcaattgttgttttgcctgtccctcccatgccccatattcc |
198 |
Q |
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| T |
34727847 |
gcaattgttgttttgccgatccctcccatgccccatattcc |
34727887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 198
Target Start/End: Original strand, 34731005 - 34731045
Alignment:
| Q |
158 |
gcaattgttgttttgcctgtccctcccatgccccatattcc |
198 |
Q |
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| T |
34731005 |
gcaattgttgttttgccgatccctcccatgccccatattcc |
34731045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 18928879 - 18928839
Alignment:
| Q |
158 |
gcaattgttgttttgcctgtccctcccatgccccatattcc |
198 |
Q |
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| T |
18928879 |
gcaattgttgttttgccgatccctcccataccccatattcc |
18928839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 194
Target Start/End: Original strand, 34735604 - 34735640
Alignment:
| Q |
158 |
gcaattgttgttttgcctgtccctcccatgccccata |
194 |
Q |
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| T |
34735604 |
gcaattgttgttttgccgatccctcccatgccccata |
34735640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 202
Target Start/End: Complemental strand, 25721351 - 25721219
Alignment:
| Q |
70 |
tagtccagctctttctatttcttgtttcacatttagaacgatgcttctggaactgaactgagttgcgagtttatgatagattgcactggcaattgttgtt |
169 |
Q |
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| T |
25721351 |
tagtccaactctttttatttcttgttcaacatttagtatcatgctgctagaattgaattgagttgcaaacctgtgatatattgcacgggcaatttcggtt |
25721252 |
T |
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| Q |
170 |
ttgcctgtccctcccatgccccatattcctatg |
202 |
Q |
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| T |
25721251 |
ttgcctattcctcccataccccaaattcctatg |
25721219 |
T |
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