View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11260_low_4 (Length: 494)
Name: NF11260_low_4
Description: NF11260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11260_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 19 - 483
Target Start/End: Original strand, 2591832 - 2592305
Alignment:
| Q |
19 |
ttcactgcatgaaacaacagcaacagacaccaatgtaataagaccagaagtactattccatcatgattctgtgagtttgagttctgacacatggaacttg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2591832 |
ttcactgcatgaaacaacagcaacagacaccaatgtaataagaccagaagtactattccatcatgattctgtgagtttgagttctgacacatggaacttg |
2591931 |
T |
|
| Q |
119 |
aatcaccatgatcatc---------atcaagttcagacacttcctcctcatccagctgcaatagcttttacaacaattcatgatactagtaattataatc |
209 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2591932 |
aatcaccatgatcatcatcaacatcatcaagttcagacacttcctcctcatccagctgcaatagcttttacaacaattcatgatactagtaattataatc |
2592031 |
T |
|
| Q |
210 |
ttccaccattgatagagaataatgtggaaaacagcatggtgccaattgatcaagtgcaatcttgtaatatggatgaggaaggaggagagttattaacatt |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2592032 |
ttccaccattgatagagaataatgtggaaaacagcatggtgccaattgatcaagtgcaatcttgtaatatggatgaggaaggaggagagttattaacatt |
2592131 |
T |
|
| Q |
310 |
ggagtcattgcaattgcaaagacaagaagagttgaatgaatgggtggaaactcaacaacaatgtcctagctttattttcagctgggagagtgttgaagga |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2592132 |
ggagtcattgcaattgcaaagacaagaagagttgaatgaatgggtggaaactcaacaacaatgtcctagctttattttcagctgggagagtgttgaagga |
2592231 |
T |
|
| Q |
410 |
caaattggaggtgaagaacaagtactagtaccaaactcatcacatatgggaacacctaattcactttctccttt |
483 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2592232 |
caaattggaggtgaagaacaagtactagtaccaaactcatcacatatgggaacacctaattcactttctccttt |
2592305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University