View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11260_low_5 (Length: 450)
Name: NF11260_low_5
Description: NF11260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11260_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 3 - 433
Target Start/End: Original strand, 41760938 - 41761368
Alignment:
| Q |
3 |
aagagcaagtttccatgccaaatttctttttaattaagttatagccttactctaagcatattttatgaaccaaattttgtttnnnnnnnnnnnnnnnnnn |
102 |
Q |
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| T |
41760938 |
aagagcaagtttccatgccaaatttctttttaattaagttatagccttactctaagcatattttatgaaccaaattttgtttaaaaaaaataggaaaagg |
41761037 |
T |
|
| Q |
103 |
nnnnnttattagtaattagagtgccattgataatcataactcacctcatttgaggtaacaaaatcatattcttatgactgagttcacacatcatggatat |
202 |
Q |
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| T |
41761038 |
aaaaattattagtaattagagtgccattgataatcataactcacctcatttgaggtaacaaaatcatattcttatgactgagttcacacatcatggatat |
41761137 |
T |
|
| Q |
203 |
gaaccaacttaccaagtaattttgagccaattatcttaagtatttgattacttttttggtgacactctaagcatttgatttgatcactatgatattgaag |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41761138 |
gaaccaacttaccaagtaattttgagccaattatcttaagtatttgattacttttttggtgacactctaagcatttgatttgatcactatgatattgaag |
41761237 |
T |
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| Q |
303 |
taaacaatactaatagcttgattaacatgaattgatacatgcacagaaacagaaagatttggatatttttatgtccttaaatgacatggtcttattagga |
402 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41761238 |
taaacaatactaataacttgattaacatgaattgatacatgcacaggaacagaaagatttggatatttttatgtccttaaatgacatggtcttattagga |
41761337 |
T |
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| Q |
403 |
gagaaaaccaatttgcttctagtcatatgat |
433 |
Q |
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| T |
41761338 |
gagaaaaccaatttgcttctagtcatatgat |
41761368 |
T |
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