View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11261_low_2 (Length: 523)
Name: NF11261_low_2
Description: NF11261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11261_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 439; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 18 - 515
Target Start/End: Original strand, 29729665 - 29730160
Alignment:
| Q |
18 |
aatcatgccaagacatcaatcataatcataatcaatatttatctaatactgccaataataattagcatatatatcttaacaaaaatgtccttttagctaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
29729665 |
aatcatgccaagacatcaatcataatcataatcaatatttatctaatactgccaatcataattagcatatatatcttaacaaaaatgtccttatagctaa |
29729764 |
T |
|
| Q |
118 |
agcaaaatcatagagaattggaggtcggaattctttaatttgctcgcagcaccctttaagtaaacaattggattggatttggaataataatacctggaac |
217 |
Q |
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| || ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
29729765 |
atcagaatcatagagaattggaggtcggaaatctttaatttgctcgcagcaccatttaagtaaac--ttggattggatttggaataataatacctggaac |
29729862 |
T |
|
| Q |
218 |
tttgcagttcaagagattcaagaagagggcagcggtcaagaatagcaagcaatccaacatagttaagagaaattaattccattcaatttaaaatggcgta |
317 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
29729863 |
tttgcagatcaagagattcaagaagagggcagcggtcaagaatagcaagcaatccaacatagttaagagaaattaattccattcaatttaagatggcgta |
29729962 |
T |
|
| Q |
318 |
aaccagatattgtttttgcaattgccaatgcttcattacacttgccaacaagagatgtgggactttgcagatcaatagattcaagaagatggcagccgtc |
417 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
29729963 |
aaccagatattgtttttgcaattgctaatgcttcattacacttgccaacaagagatgtgggactttgcagatcaaaagattcaagatgatggcagccgtc |
29730062 |
T |
|
| Q |
418 |
aagaatagcaagaaatccaacatagttaacataaattccattcagtttaagatggcgtaacccagtcattgttttcgcaatagcaagtgcttcatctc |
515 |
Q |
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| T |
29730063 |
aagaatagcaagaaatccaacatagttaacataaattccattcagtttaagatggcgtaacccagtcattgttttcgcaaaagcaagtgcttcatctc |
29730160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 394 - 509
Target Start/End: Complemental strand, 29713433 - 29713318
Alignment:
| Q |
394 |
agattcaagaagatggcagccgtcaagaatagcaagaaatccaacatagttaacataaattccattcagtttaagatggcgtaacccagtcattgttttc |
493 |
Q |
| |
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||||||||||||| ||||||| ||||||||||||| |||||| || ||||| | ||| |||||||| ||||||||||| |||||||| ||||||||| |
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| T |
29713433 |
agattcaagaagagggcagccatcaagaatagcaaccaatccaccacagttactaaaaaatccattcaatttaagatggcataacccagacattgttttt |
29713334 |
T |
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| Q |
494 |
gcaatagcaagtgctt |
509 |
Q |
| |
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|||||| ||| ||||| |
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| T |
29713333 |
gcaataacaaatgctt |
29713318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 228 - 339
Target Start/End: Complemental strand, 29713436 - 29713329
Alignment:
| Q |
228 |
aagagattcaagaagagggcagcggtcaagaatagcaagcaatccaacatagttaagagaaattaattccattcaatttaaaatggcgtaaaccagatat |
327 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| ||||||| || ||||| | | || |||||||||||||| ||||| ||| ||||| || |
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| T |
29713436 |
aagagattcaagaagagggcagccatcaagaatagcaaccaatccaccacagttactaaa----aaatccattcaatttaagatggcataacccagacat |
29713341 |
T |
|
| Q |
328 |
tgtttttgcaat |
339 |
Q |
| |
|
|||||||||||| |
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|
| T |
29713340 |
tgtttttgcaat |
29713329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 384 - 513
Target Start/End: Complemental strand, 29752744 - 29752615
Alignment:
| Q |
384 |
gcagatcaatagattcaagaagatggcagccgtcaagaatagcaagaaatccaacatagttaacataaattccattcagtttaagatggcgtaacccagt |
483 |
Q |
| |
|
||||||||| |||||| ||||| |||| ||||||||||||||||| ||| || ||||||||| | | |||| || ||| ||||||||||||||| | |
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|
| T |
29752744 |
gcagatcaagagattcgagaagcgggcaaccgtcaagaatagcaagcaattcatcatagttaagccataatccaagcaattttagatggcgtaacccact |
29752645 |
T |
|
| Q |
484 |
cattgttttcgcaatagcaagtgcttcatc |
513 |
Q |
| |
|
||||||||| |||||| || ||||||||| |
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|
| T |
29752644 |
cattgtttttgcaatacaaaatgcttcatc |
29752615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 221 - 284
Target Start/End: Complemental strand, 29752744 - 29752681
Alignment:
| Q |
221 |
gcagttcaagagattcaagaagagggcagcggtcaagaatagcaagcaatccaacatagttaag |
284 |
Q |
| |
|
|||| ||||||||||| ||||| ||||| | ||||||||||||||||||| || |||||||||| |
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|
| T |
29752744 |
gcagatcaagagattcgagaagcgggcaaccgtcaagaatagcaagcaattcatcatagttaag |
29752681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 229 - 275
Target Start/End: Original strand, 30621499 - 30621545
Alignment:
| Q |
229 |
agagattcaagaagagggcagcggtcaagaatagcaagcaatccaac |
275 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||| ||||| |
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| T |
30621499 |
agagattcaagaagagggcatccatcaagaatagcaagcaacccaac |
30621545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 394 - 509
Target Start/End: Original strand, 41100173 - 41100288
Alignment:
| Q |
394 |
agattcaagaagatggcagccgtcaagaatagcaagaaatccaacatagttaacataaattccattcagtttaagatggcgtaacccagtcattgttttc |
493 |
Q |
| |
|
||||||||||||| ||||||| ||||||| |||||| |||| | |||| ||| ||| |||||||| || ||||||||||||||||| |||| |||| |
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|
| T |
41100173 |
agattcaagaagagggcagccatcaagaagagcaagcaatctaccataattacgcaaaaatccattcaattcaagatggcgtaacccagacattattttt |
41100272 |
T |
|
| Q |
494 |
gcaatagcaagtgctt |
509 |
Q |
| |
|
|||||| ||| ||||| |
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|
| T |
41100273 |
gcaataacaaatgctt |
41100288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 228 - 339
Target Start/End: Original strand, 41100170 - 41100277
Alignment:
| Q |
228 |
aagagattcaagaagagggcagcggtcaagaatagcaagcaatccaacatagttaagagaaattaattccattcaatttaaaatggcgtaaaccagatat |
327 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||||||||| | |||| ||| | | || ||||||||||| || ||||||||| ||||| || |
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|
| T |
41100170 |
aagagattcaagaagagggcagccatcaagaagagcaagcaatctaccataattacgcaa----aaatccattcaattcaagatggcgtaacccagacat |
41100265 |
T |
|
| Q |
328 |
tgtttttgcaat |
339 |
Q |
| |
|
| |||||||||| |
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|
| T |
41100266 |
tatttttgcaat |
41100277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 263
Target Start/End: Complemental strand, 27718396 - 27718359
Alignment:
| Q |
226 |
tcaagagattcaagaagagggcagcggtcaagaatagc |
263 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
27718396 |
tcaagagattcgagaagagggcatcggtcaagaatagc |
27718359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 269
Target Start/End: Complemental strand, 38285760 - 38285719
Alignment:
| Q |
228 |
aagagattcaagaagagggcagcggtcaagaatagcaagcaa |
269 |
Q |
| |
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||||||||||||||||||||| | ||||||||||||||||| |
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|
| T |
38285760 |
aagagattcaagaagagggcatccatcaagaatagcaagcaa |
38285719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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