View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11261_low_3 (Length: 472)
Name: NF11261_low_3
Description: NF11261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11261_low_3 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 131; Significance: 9e-68; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 342 - 472
Target Start/End: Complemental strand, 35443393 - 35443263
Alignment:
| Q |
342 |
ctctaatatttgcgatacgtcaagtggatccgcaatgcatactcttattactcgtcaagatgttgaccaggtaattaattgacctctctctaatgatatg |
441 |
Q |
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| T |
35443393 |
ctctaatatttgcgatacgtcaagtggatccgcaatgcatactcttattactcgtcaagatgttgaccaggtaattaattgacctctctctaatgatatg |
35443294 |
T |
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| Q |
442 |
atacacttcactcattgttgatttagaatag |
472 |
Q |
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| T |
35443293 |
atacacttcactcattgttgatttagaatag |
35443263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 115; Significance: 3e-58; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 63 - 193
Target Start/End: Original strand, 29700693 - 29700823
Alignment:
| Q |
63 |
aaagaacaaagaaaatgtctatgaatgagatgaacaagaaatcagaactcatcttcattcctgcaccaggaattggccacttagcttcagctcttgaatt |
162 |
Q |
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| T |
29700693 |
aaagaacaaagaaaatgtctatgagtgatataaacaagaattcagaactcatcttcattcctgcaccaggaattggccacttagcttcagctcttgaatt |
29700792 |
T |
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| Q |
163 |
tgcaaaacttttaaccaaccatgacaaaaat |
193 |
Q |
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| T |
29700793 |
tgcaaaacttttaaccaaccatgacaaaaat |
29700823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 70 - 181
Target Start/End: Original strand, 29678240 - 29678351
Alignment:
| Q |
70 |
aaagaaaatgtctatgaatgagatgaacaagaaatcagaactcatcttcattcctgcaccaggaattggccacttagcttcagctcttgaatttgcaaaa |
169 |
Q |
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| T |
29678240 |
aaagaaaatggttgtgagtgagatggagaagaaagcagaacttatcttcattccctcaccagatattggccacttagtttcatcacttgaatttgcaaaa |
29678339 |
T |
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| Q |
170 |
cttttaaccaac |
181 |
Q |
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| T |
29678340 |
ctcttaatcaac |
29678351 |
T |
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