View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11261_low_4 (Length: 249)
Name: NF11261_low_4
Description: NF11261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11261_low_4 |
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| [»] scaffold1194 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 4 - 235
Target Start/End: Complemental strand, 16590713 - 16590482
Alignment:
| Q |
4 |
ggagaagcataggagagagccattgttggagaagaagcaatactatgaggattgtcctggttgcaaggttgaacaagaaaatgagcttaatgaaggagta |
103 |
Q |
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| T |
16590713 |
ggaggagcatatgagagagccattgttggagaagaagcaatactatgaagattgtcctggttgcaaggttgaacaagaaaatgagcttaatgaaggagta |
16590614 |
T |
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| Q |
104 |
tccataataaagcttttgattatatggatggtggttttatcagctagtaatcattattcaacttcttgttattannnnnnncacttgtagaataattgtt |
203 |
Q |
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| T |
16590613 |
tccataataaagcttttgattatatggatggtggttttatcagcaagtaagcattattcaacttcttcttattatttttttcacttgtagaataattgtt |
16590514 |
T |
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| Q |
204 |
ctttgatactttttgtttatatgtgattcttg |
235 |
Q |
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| T |
16590513 |
ctttgatactttttgtttatatgtgattcttg |
16590482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 170
Target Start/End: Complemental strand, 16530723 - 16530572
Alignment:
| Q |
19 |
agagccattgttggagaagaagcaatactatgaggattgtcctggttgcaaggttgaacaagaaaatgagcttaatgaaggagtatccataataaagctt |
118 |
Q |
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| T |
16530723 |
agagccattgttggagaagaagcaatactatgaggattgtcctggttgtaaagtggaacaaactaaagagcttaatcaagggctatccatgataaatctt |
16530624 |
T |
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| Q |
119 |
ttgattatatggatggtggttttatcagctagtaatcattattcaacttctt |
170 |
Q |
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| T |
16530623 |
gtgattatttggatgattgttttatctgctagtaagcattattcaacttctt |
16530572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 16 - 135
Target Start/End: Complemental strand, 16522479 - 16522360
Alignment:
| Q |
16 |
gagagagccattgttggagaagaagcaatactatgaggattgtcctggttgcaaggttgaacaagaaaatgagcttaatgaaggagtatccataataaag |
115 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| || |||||||| | || |||||||| | ||| |
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| T |
16522479 |
gagagagccattgttggagaagaagcaatactataaggattgtcctggttgtaaggttgaacaagccaaagagcttaacaagggggtatccattacaaat |
16522380 |
T |
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| Q |
116 |
cttttgattatatggatggt |
135 |
Q |
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| T |
16522379 |
cttttggtcatatggatggt |
16522360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1194 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold1194
Description:
Target: scaffold1194; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 19 - 158
Target Start/End: Complemental strand, 1441 - 1302
Alignment:
| Q |
19 |
agagccattgttggagaagaagcaatactatgaggattgtcctggttgcaaggttgaacaagaaaatgagcttaatgaaggagtatccataataaagctt |
118 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||| || || |||||| || ||||||||| |||| ||||||||||||| ||| |
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| T |
1441 |
agagccattgttggagaagaagcaatactatgaagattgtcctggttgtaaagtggaacaaactaaagagcttaatcaagggctatccataataaatctt |
1342 |
T |
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| Q |
119 |
ttgattatatggatggtggttttatcagctagtaatcatt |
158 |
Q |
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| T |
1341 |
gtgattatttggatggttgtgttatctgctggtaagcatt |
1302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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