View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11262_high_6 (Length: 320)

Name: NF11262_high_6
Description: NF11262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11262_high_6
NF11262_high_6
[»] chr2 (23 HSPs)
chr2 (15-256)||(13136655-13136906)
chr2 (122-252)||(43722904-43723035)
chr2 (122-260)||(6825974-6826114)
chr2 (121-257)||(5104952-5105086)
chr2 (122-260)||(3874482-3874630)
chr2 (122-203)||(13972732-13972813)
chr2 (122-222)||(10599951-10600051)
chr2 (244-320)||(13136964-13137040)
chr2 (122-197)||(5665830-5665905)
chr2 (244-301)||(6826168-6826225)
chr2 (122-191)||(38014636-38014705)
chr2 (244-295)||(5666058-5666109)
chr2 (121-191)||(31430569-31430639)
chr2 (244-301)||(3874684-3874741)
chr2 (122-203)||(16788389-16788469)
chr2 (245-301)||(5105124-5105180)
chr2 (245-301)||(43723098-43723154)
chr2 (201-260)||(13972656-13972717)
chr2 (122-191)||(25873203-25873272)
chr2 (244-295)||(13972551-13972602)
chr2 (122-191)||(25869835-25869904)
chr2 (146-191)||(25139971-25140016)
chr2 (122-162)||(40780658-40780698)
[»] chr5 (27 HSPs)
chr5 (122-260)||(30065562-30065702)
chr5 (144-260)||(2836702-2836819)
chr5 (124-204)||(39191333-39191413)
chr5 (122-260)||(28788252-28788401)
chr5 (122-260)||(7270241-7270377)
chr5 (143-252)||(18031731-18031850)
chr5 (146-260)||(4100284-4100413)
chr5 (144-203)||(32837105-32837164)
chr5 (144-203)||(37214788-37214847)
chr5 (122-260)||(40916739-40916889)
chr5 (145-203)||(22937974-22938032)
chr5 (244-301)||(30065756-30065813)
chr5 (122-203)||(43490793-43490874)
chr5 (120-203)||(21827959-21828043)
chr5 (122-203)||(21336660-21336742)
chr5 (244-301)||(4100173-4100230)
chr5 (122-191)||(14016967-14017036)
chr5 (156-261)||(2837526-2837641)
chr5 (194-260)||(33551415-33551482)
chr5 (244-295)||(33551536-33551587)
chr5 (121-191)||(17747616-17747686)
chr5 (244-295)||(7270431-7270482)
chr5 (244-295)||(18031912-18031963)
chr5 (244-298)||(17663965-17664019)
chr5 (122-171)||(25329456-25329505)
chr5 (122-198)||(28442105-28442181)
chr5 (244-296)||(18240150-18240202)
[»] chr7 (19 HSPs)
chr7 (122-260)||(4694723-4694871)
chr7 (122-260)||(45287989-45288138)
chr7 (121-260)||(9865494-9865643)
chr7 (122-204)||(45291392-45291474)
chr7 (122-203)||(4596843-4596924)
chr7 (122-203)||(20081559-20081640)
chr7 (122-260)||(9080376-9080525)
chr7 (122-203)||(17729973-17730054)
chr7 (121-203)||(8276011-8276093)
chr7 (244-301)||(4694925-4694982)
chr7 (244-301)||(9865383-9865440)
chr7 (143-203)||(10344637-10344697)
chr7 (244-295)||(17730217-17730268)
chr7 (244-298)||(9273779-9273833)
chr7 (244-295)||(9080579-9080630)
chr7 (122-203)||(9273953-9274034)
chr7 (20-103)||(22620863-22620946)
chr7 (122-198)||(4542074-4542150)
chr7 (122-198)||(10431386-10431462)
[»] chr1 (15 HSPs)
chr1 (122-260)||(21019228-21019367)
chr1 (122-260)||(2404722-2404870)
chr1 (122-260)||(21108245-21108393)
chr1 (244-301)||(41058953-41059010)
chr1 (122-260)||(42021721-42021871)
chr1 (121-203)||(41059152-41059235)
chr1 (244-291)||(21108144-21108191)
chr1 (121-191)||(45961638-45961708)
chr1 (244-301)||(2404924-2404981)
chr1 (123-191)||(27537144-27537212)
chr1 (144-203)||(29644227-29644286)
chr1 (244-295)||(21019122-21019173)
chr1 (122-191)||(2793299-2793368)
chr1 (122-159)||(49147113-49147150)
chr1 (228-260)||(41059064-41059096)
[»] chr4 (41 HSPs)
chr4 (121-260)||(19819949-19820089)
chr4 (121-260)||(27677817-27677967)
chr4 (121-204)||(53010376-53010459)
chr4 (122-260)||(27691885-27692025)
chr4 (122-260)||(15430616-15430766)
chr4 (122-260)||(15437230-15437380)
chr4 (122-260)||(44164001-44164142)
chr4 (122-260)||(19826701-19826850)
chr4 (122-203)||(24044976-24045057)
chr4 (122-260)||(52007292-52007431)
chr4 (122-203)||(3718336-3718417)
chr4 (143-203)||(40794213-40794273)
chr4 (144-203)||(14571048-14571107)
chr4 (122-252)||(35509201-35509320)
chr4 (122-203)||(12782106-12782187)
chr4 (244-301)||(27677706-27677763)
chr4 (143-203)||(21419000-21419060)
chr4 (121-191)||(29323978-29324048)
chr4 (244-301)||(24044792-24044849)
chr4 (244-301)||(27691774-27691831)
chr4 (122-191)||(44809835-44809904)
chr4 (244-295)||(19820143-19820194)
chr4 (244-295)||(21419202-21419253)
chr4 (244-295)||(35509379-35509430)
chr4 (244-295)||(52007187-52007238)
chr4 (122-203)||(27013229-27013311)
chr4 (244-301)||(15430505-15430562)
chr4 (244-301)||(15437119-15437176)
chr4 (244-301)||(44164196-44164253)
chr4 (127-191)||(34320775-34320839)
chr4 (244-295)||(3718538-3718589)
chr4 (144-203)||(5680491-5680550)
chr4 (244-295)||(19826904-19826955)
chr4 (122-198)||(15431164-15431240)
chr4 (122-198)||(15437778-15437854)
chr4 (244-291)||(12782318-12782365)
chr4 (244-295)||(40794416-40794467)
chr4 (122-173)||(49269735-49269786)
chr4 (226-260)||(24044903-24044937)
chr4 (122-198)||(3798720-3798796)
chr4 (244-296)||(8875418-8875470)
[»] chr3 (35 HSPs)
chr3 (122-260)||(10880776-10880924)
chr3 (121-260)||(29344624-29344774)
chr3 (122-260)||(53814971-53815120)
chr3 (122-260)||(34984602-34984758)
chr3 (122-252)||(41976321-41976461)
chr3 (120-203)||(16243164-16243247)
chr3 (142-239)||(43808898-43809003)
chr3 (115-203)||(54460360-54460448)
chr3 (122-261)||(20729336-20729477)
chr3 (244-301)||(34984491-34984548)
chr3 (244-301)||(41976493-41976550)
chr3 (130-203)||(54736769-54736842)
chr3 (123-203)||(9380012-9380092)
chr3 (144-203)||(16185575-16185634)
chr3 (144-203)||(35411699-35411758)
chr3 (122-203)||(3839790-3839874)
chr3 (122-199)||(19305470-19305547)
chr3 (244-301)||(31548753-31548810)
chr3 (144-203)||(31548573-31548632)
chr3 (198-260)||(6445513-6445577)
chr3 (122-191)||(19302295-19302364)
chr3 (244-295)||(16243374-16243425)
chr3 (247-301)||(29344513-29344567)
chr3 (122-198)||(10884018-10884094)
chr3 (122-198)||(23299477-23299553)
chr3 (244-296)||(3293591-3293643)
chr3 (244-295)||(3840016-3840067)
chr3 (197-260)||(54460460-54460525)
chr3 (122-198)||(538015-538091)
chr3 (122-198)||(6921890-6921966)
chr3 (244-301)||(10880978-10881035)
chr3 (226-260)||(16243286-16243320)
chr3 (223-260)||(28265112-28265149)
chr3 (228-260)||(3839930-3839962)
chr3 (122-162)||(49743785-49743825)
[»] scaffold0520 (2 HSPs)
scaffold0520 (122-260)||(4723-4880)
scaffold0520 (245-301)||(4631-4687)
[»] chr6 (10 HSPs)
chr6 (121-262)||(28666044-28666177)
chr6 (120-260)||(10289184-10289334)
chr6 (121-203)||(9953035-9953117)
chr6 (244-301)||(10289388-10289445)
chr6 (244-295)||(28665920-28665971)
chr6 (156-203)||(13004434-13004481)
chr6 (244-296)||(22561782-22561834)
chr6 (143-192)||(20181294-20181343)
chr6 (143-192)||(22154648-22154697)
chr6 (121-159)||(12987037-12987075)
[»] chr8 (13 HSPs)
chr8 (122-260)||(12582218-12582366)
chr8 (122-252)||(5981083-5981220)
chr8 (121-203)||(45156837-45156919)
chr8 (244-295)||(12582420-12582471)
chr8 (244-301)||(5980964-5981021)
chr8 (144-200)||(5540917-5540973)
chr8 (144-203)||(14420886-14420945)
chr8 (122-185)||(18826771-18826834)
chr8 (122-202)||(30640505-30640587)
chr8 (198-260)||(17895369-17895433)
chr8 (121-203)||(19792925-19793009)
chr8 (146-204)||(25228039-25228096)
chr8 (122-186)||(10663011-10663075)
[»] scaffold0757 (2 HSPs)
scaffold0757 (122-260)||(4563-4713)
scaffold0757 (244-295)||(4767-4818)
[»] scaffold0270 (3 HSPs)
scaffold0270 (122-260)||(911-1060)
scaffold0270 (146-203)||(4339-4396)
scaffold0270 (146-203)||(11469-11526)
[»] scaffold0005 (1 HSPs)
scaffold0005 (144-203)||(246269-246328)
[»] scaffold0015 (1 HSPs)
scaffold0015 (144-203)||(197264-197323)
[»] scaffold0381 (1 HSPs)
scaffold0381 (122-203)||(6472-6554)
[»] scaffold1993 (1 HSPs)
scaffold1993 (122-203)||(1045-1126)
[»] scaffold0080 (1 HSPs)
scaffold0080 (145-204)||(26277-26336)


Alignment Details
Target: chr2 (Bit Score: 156; Significance: 7e-83; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 15 - 256
Target Start/End: Original strand, 13136655 - 13136906
Alignment:
Q  15 catcactctagatccttctaaaaacacgacttcatctaatataacatggcctattttattataatggaactatcttgattcattacattttcacattaca 114  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||    
T  13136655 catcaatctagatccttctaaaaacacgacttcatctaatataacatggcctattttattatgatggacctatcttgattcattacattttcatattaca 13136754  T
Q  115 tgtttcctgatgacagtcaatcatttattatttttagagtctttttatgatatttttgaattcacaagcaagattaagc---------agcaagaaaaaa 205  Q
    |||||||| |||||||||| |||||| |||||||||||||| ||||||||||||||||| ||||||| |||||||||||         ||||||||||||    
T  13136755 tgtttcctaatgacagtcagtcatttgttatttttagagtcattttatgatatttttgagttcacaaacaagattaagcagcaagaaaagcaagaaaaaa 13136854  T
Q  206 ctgaagaagctg-aaaaaggcatcgtgtcacgattactgaaaaacgtgacac 256  Q
    |||||||||||| ||||| |||| |||||| |||||||||||||| ||||||    
T  13136855 ctgaagaagctgaaaaaaagcattgtgtcatgattactgaaaaacatgacac 13136906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 122 - 252
Target Start/End: Original strand, 43722904 - 43723035
Alignment:
Q  122 tgatgacagtcaatcatttattatttttagagtctttttatgatatttttgaattcacaagcaagattaagcagcaagaaaaaactgaagaagctgaaaa 221  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  43722904 tgatgacagtcaatcattcgttatttttagagtctttttatgatatttttgagttcacaagcaagattaagcagcaagaaaaaactgaagaagctgaaaa 43723003  T
Q  222 ag-gcatcgtgtcacgattactgaaaaacgtg 252  Q
    || |||||||||||||||||||||||||||||    
T  43723004 agagcatcgtgtcacgattactgaaaaacgtg 43723035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 122 - 260
Target Start/End: Original strand, 6825974 - 6826114
Alignment:
Q  122 tgatgacagtcaatcatttattatttttagagtctttttatgatatttttgaattcacaagcaagattaagcagcaagaaaaaactgaagaagctg--aa 219  Q
    ||||||||||||||||||  |||| |||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||  ||    
T  6825974 tgatgacagtcaatcattcgttatatttaaagtctttttatgatatttttgagttcacaagcaagattaagcatcaagaaaaaactgaagaagatgaaaa 6826073  T
Q  220 aaaggcatcgtgtcacgattactgaaaaacgtgacacgatt 260  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  6826074 aaaggcatcgtgtcacgattactgaaaaacgtaacacgatt 6826114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 121 - 257
Target Start/End: Original strand, 5104952 - 5105086
Alignment:
Q  121 ctgatgacagtcaatcatttattatttttagagtctttttatgatatttttgaattcacaagcaagattaagcagcaagaaaaaactgaagaagctgaaa 220  Q
    ||||||||||||| ||||| | |  ||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  5104952 ctgatgacagtcagtcattcact--ttttagagtttttttatgatatttttgagttcacaagcaagattaagcagcaag-aaaaactgaagaagctgaaa 5105048  T
Q  221 aa-ggcatcgtgtcacgattactgaaaaacgtgacacg 257  Q
    || || ||||||||||||||||||||||||||||||||    
T  5105049 aaggggatcgtgtcacgattactgaaaaacgtgacacg 5105086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 122 - 260
Target Start/End: Original strand, 3874482 - 3874630
Alignment:
Q  122 tgatgacagtcaatcatttattatttttagagtctttttatgatatttttgaattcacaagcaagattaagc---------agcaagaaaaaactgaaga 212  Q
    |||||||||||| ||||| ||||||||||||||||||||| ||||||||||| ||||||| |||||||||||         |||||||||||| ||||||    
T  3874482 tgatgacagtcagtcattcattatttttagagtctttttaggatatttttgagttcacaaacaagattaagcagcaagaaaagcaagaaaaaattgaaga 3874581  T
Q  213 agctgaaaaa-ggcatcgtgtcacgattactgaaaaacgtgacacgatt 260  Q
    | |||||||| |||||||||||||||||| ||||||||||| |||||||    
T  3874582 aactgaaaaagggcatcgtgtcacgattattgaaaaacgtgtcacgatt 3874630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 122 - 203
Target Start/End: Complemental strand, 13972813 - 13972732
Alignment:
Q  122 tgatgacagtcaatcatttattatttttagagtctttttatgatatttttgaattcacaagcaagattaagcagcaagaaaa 203  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  13972813 tgatgacagtcaatcattcgttatttttagagtctttttatgatatttttgagttcacaaacaagattaagcagcaagaaaa 13972732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 122 - 222
Target Start/End: Original strand, 10599951 - 10600051
Alignment:
Q  122 tgatgacagtcaatcatttattatttttagagtctttttatgatatttttgaattcacaagcaagattaagcagcaagaaaaaactgaagaagctgaaaa 221  Q
    |||||||||||| ||||| | |||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||   ||| ||||||||||    
T  10599951 tgatgacagtcagtcattcactatttttagaatctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaacaagaaaaagctgaaaa 10600050  T
Q  222 a 222  Q
    |    
T  10600051 a 10600051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 244 - 320
Target Start/End: Original strand, 13136964 - 13137040
Alignment:
Q  244 aaaaacgtgacacgattatggaaaccttaatttgggtggtttgttacacaaggaagaatatgtgcagtataccaatt 320  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||| ||| ||||||||||||    
T  13136964 aaaaacgtgacacgattatggaaaccctaatttgggtgatttgttagacaaggaagaataggtgtagtataccaatt 13137040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 122 - 197
Target Start/End: Original strand, 5665830 - 5665905
Alignment:
Q  122 tgatgacagtcaatcatttattatttttagagtctttttatgatatttttgaattcacaagcaagattaagcagca 197  Q
    ||||||||||||||||||   ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  5665830 tgatgacagtcaatcattcgctatttttagagtctttttatgatatttttgagttcacaagcaagcttaagcagca 5665905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 244 - 301
Target Start/End: Original strand, 6826168 - 6826225
Alignment:
Q  244 aaaaacgtgacacgattatggaaaccttaatttgggtggtttgttacacaaggaagaa 301  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  6826168 aaaaacgtgacacaattatggaaaccctaatttgggtggtttgttacacaaggaagaa 6826225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 122 - 191
Target Start/End: Original strand, 38014636 - 38014705
Alignment:
Q  122 tgatgacagtcaatcatttattatttttagagtctttttatgatatttttgaattcacaagcaagattaa 191  Q
    |||||||||||| ||||||  |||||||||||||||||||||||| |||||| |||||||||||| ||||    
T  38014636 tgatgacagtcagtcatttgctatttttagagtctttttatgataattttgagttcacaagcaagcttaa 38014705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 244 - 295
Target Start/End: Original strand, 5666058 - 5666109
Alignment:
Q  244 aaaaacgtgacacgattatggaaaccttaatttgggtggtttgttacacaag 295  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  5666058 aaaaacgtgacacgattatggaaaccctaatttaggtggtttgttacacaag 5666109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 121 - 191
Target Start/End: Complemental strand, 31430639 - 31430569
Alignment:
Q  121 ctgatgacagtcaatcatttattatttttagagtctttttatgatatttttgaattcacaagcaagattaa 191  Q
    ||||||||||| | ||||||  |||||||||||||||||||||||| |||||| |||||||||||| ||||    
T  31430639 ctgatgacagttagtcatttgctatttttagagtctttttatgataattttgagttcacaagcaagcttaa 31430569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 244 - 301
Target Start/End: Original strand, 3874684 - 3874741
Alignment:
Q  244 aaaaacgtgacacgattatggaaaccttaatttgggtggtttgttacacaaggaagaa 301  Q
    |||||||||||| ||||||||||||| |||||| ||||||||||||||||||| ||||    
T  3874684 aaaaacgtgacatgattatggaaaccctaattttggtggtttgttacacaaggcagaa 3874741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 122 - 203
Target Start/End: Original strand, 16788389 - 16788469
Alignment:
Q  122 tgatgacagtcaatcatttattatttttagagtctttttatgatatttttgaattcacaagcaagattaagcagcaagaaaa 203  Q
    |||||||||||| ||||||  |||||||||| |||||| |||||| |||||| |||||||||||| ||||||| ||||||||    
T  16788389 tgatgacagtcagtcatttgctatttttagaatctttt-atgataattttgagttcacaagcaagcttaagcaacaagaaaa 16788469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 245 - 301
Target Start/End: Original strand, 5105124 - 5105180
Alignment:
Q  245 aaaacgtgacacgattatggaaaccttaatttgggtggtttgttacacaaggaagaa 301  Q
    |||||||  |||||||||||||||| |||||| ||| ||||||||||||||||||||    
T  5105124 aaaacgtagcacgattatggaaaccctaattttggttgtttgttacacaaggaagaa 5105180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 245 - 301
Target Start/End: Original strand, 43723098 - 43723154
Alignment:
Q  245 aaaacgtgacacgattatggaaaccttaatttgggtggtttgttacacaaggaagaa 301  Q
    |||||||||||| ||||||| |||| ||||||||||||||||||||| |||| ||||    
T  43723098 aaaacgtgacacaattatgggaaccctaatttgggtggtttgttacagaaggcagaa 43723154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 260
Target Start/End: Complemental strand, 13972717 - 13972656
Alignment:
Q  201 aaaaactgaagaagctgaaaaa--ggcatcgtgtcacgattactgaaaaacgtgacacgatt 260  Q
    ||||||||||||| ||||||||  || ||||||||| |||||||| ||||||||||||||||    
T  13972717 aaaaactgaagaaactgaaaaaaggggatcgtgtcatgattactggaaaacgtgacacgatt 13972656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 191
Target Start/End: Original strand, 25873203 - 25873272
Alignment:
Q  122 tgatgacagtcaatcatttattatttttagagtcttttt-atgatatttttgaattcacaagcaagattaa 191  Q
    |||||||||||| ||||| | |||||||||||||||||| |||||| |||||| |||||||||||| ||||    
T  25873203 tgatgacagtcagtcattcactatttttagagtctttttcatgata-ttttgagttcacaagcaagtttaa 25873272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 244 - 295
Target Start/End: Complemental strand, 13972602 - 13972551
Alignment:
Q  244 aaaaacgtgacacgattatggaaaccttaatttgggtggtttgttacacaag 295  Q
    |||||| |||||| |||||||||| | |||||| ||||||||||||||||||    
T  13972602 aaaaacatgacacaattatggaaatcctaatttaggtggtttgttacacaag 13972551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 191
Target Start/End: Original strand, 25869835 - 25869904
Alignment:
Q  122 tgatgacagtcaatcatttattatttttagagtcttttt-atgatatttttgaattcacaagcaagattaa 191  Q
    |||||||||||| ||||| | |||||||||||||||||| |||||| |||||| |||||||| ||| ||||    
T  25869835 tgatgacagtcagtcattcactatttttagagtctttttcatgata-ttttgagttcacaagaaagtttaa 25869904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 191
Target Start/End: Complemental strand, 25140016 - 25139971
Alignment:
Q  146 ttttagagtctttttatgatatttttgaattcacaagcaagattaa 191  Q
    ||||||||| |||||||||||||||||| |||||||| ||| ||||    
T  25140016 ttttagagtttttttatgatatttttgagttcacaagtaagcttaa 25139971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 40780658 - 40780698
Alignment:
Q  122 tgatgacagtcaatcatttattatttttagagtctttttat 162  Q
    ||||||||||||||||||   ||||||||||||||||||||    
T  40780658 tgatgacagtcaatcattcgctatttttagagtctttttat 40780698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 3e-45; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 122 - 260
Target Start/End: Original strand, 30065562 - 30065702
Alignment:
Q  122 tgatgacagtcaatcatttattatttttagagtctttttatgatatttttgaattcacaagcaagattaagcagcaagaaaaaactgaagaagc-tgaaa 220  Q
    |||||||| ||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| | |||    
T  30065562 tgatgacaatcattcattcgttatttttagagtctttttatgatatttttgaattcacaagcaagattaagcaacaagaaaaaactgaaaaagcttaaaa 30065661  T
Q  221 aaggcatcgtgtcacgattact-gaaaaacgtgacacgatt 260  Q
    ||||||||||||||||||||||  |||||||||||||||||    
T  30065662 aaggcatcgtgtcacgattactaaaaaaacgtgacacgatt 30065702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 144 - 260
Target Start/End: Original strand, 2836702 - 2836819
Alignment:
Q  144 atttttagagtctttttatgatatttttgaattcacaagcaagattaagcagcaagaaaaaactgaagaagctgaaaaa--ggcatcgtgtcacgattac 241  Q
    |||||||||||||||||||||||||||||| |||||||||||  |||||||||||| ||||||||||||| ||||||||  || ||||||||||||||||    
T  2836702 atttttagagtctttttatgatatttttgagttcacaagcaaacttaagcagcaag-aaaaactgaagaaactgaaaaaagggaatcgtgtcacgattac 2836800  T
Q  242 tgaaaaacgtgacacgatt 260  Q
    ||||||||||| |||||||    
T  2836801 tgaaaaacgtgtcacgatt 2836819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 124 - 204
Target Start/End: Original strand, 39191333 - 39191413
Alignment:
Q  124 atgacagtcaatcatttattatttttagagtctttttatgatatttttgaattcacaagcaagattaagcagcaagaaaaa 204  Q
    ||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||    
T  39191333 atgacagtcaatcatttgttatttttagagtctttttatgatacttttgagttcacaagcaagcttaagcagcaagaaaaa 39191413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 122 - 260
Target Start/End: Complemental strand, 28788401 - 28788252
Alignment:
Q  122 tgatgacagtcaatcatttattatttttagagtctttttatgatatttttgaattcacaagcaagattaagcagcaaga---------aaaaactgaaga 212  Q
    |||||||||||| ||||||  ||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||         |||| |||||||    
T  28788401 tgatgacagtcagtcatttgctatttttagagtctttttatgatattttttagttcacaagcaagcttaagcagcaagaaaaacaagaaaaatctgaaga 28788302  T
Q  213 agctgaaa--aaggcatcgtgtcacgattactgaaaaacgtgacacgatt 260  Q
    | ||||||  | |||||||||||| ||||||||||||||||| |||||||    
T  28788301 aactgaaaagagggcatcgtgtcatgattactgaaaaacgtgtcacgatt 28788252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 122 - 260
Target Start/End: Original strand, 7270241 - 7270377
Alignment:
Q  122 tgatgacagtcaatcatttattatttttagagtctttttatgatatttttgaattcacaagcaagattaagcagcaag-aaaaaactgaagaagctgaaa 220  Q
    |||||||||||  |||||   ||||||||||||||||||||||||||||||| |||||||||||||  ||    |||| |||||||||||||| ||||||    
T  7270241 tgatgacagtctgtcattcgctatttttagagtctttttatgatatttttgagttcacaagcaagaaaaa----caagaaaaaaactgaagaaactgaaa 7270336  T
Q  221 aa-ggcatcgtgtcacgattactgaaaaacgtgacacgatt 260  Q
    || ||||||||||||| |||| ||||||| ||| |||||||    
T  7270337 aagggcatcgtgtcactattattgaaaaatgtgtcacgatt 7270377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 143 - 252
Target Start/End: Original strand, 18031731 - 18031850
Alignment:
Q  143 tatttttagagtctttttatgatatttttgaattcacaagcaagattaagcagcaaga--------aaaaactgaagaagctgaaaaa--ggcatcgtgt 232  Q
    |||||||||||||||||||||||||||| || |||| ||||||| |||||||||||||        ||||||||||||| ||||||||  || |||||||    
T  18031731 tatttttagagtctttttatgatattttcgagttcaaaagcaagtttaagcagcaagaaaagcaagaaaaactgaagaaactgaaaaaatggaatcgtgt 18031830  T
Q  233 cacgattactgaaaaacgtg 252  Q
    ||||||||||||||||||||    
T  18031831 cacgattactgaaaaacgtg 18031850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 146 - 260
Target Start/End: Complemental strand, 4100413 - 4100284
Alignment:
Q  146 ttttagagtctttttatgatatttttgaattcacaagcaagattaagcagcaagaa--------aaaactgaagaagctg-------aaaaaggcatcgt 230  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||        |||||||||||| |||       ||||||| |||||    
T  4100413 ttttagagtctttttatgatatttttgagttcacaggcaagattaagcagcaagaaaagcaaggaaaactgaagaaactgaagaaaaaaaaagggatcgt 4100314  T
Q  231 gtcacgattactgaaaaacgtgacacgatt 260  Q
    |||||||||||| |||||||||||||||||    
T  4100313 gtcacgattactcaaaaacgtgacacgatt 4100284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 144 - 203
Target Start/End: Original strand, 32837105 - 32837164
Alignment:
Q  144 atttttagagtctttttatgatatttttgaattcacaagcaagattaagcagcaagaaaa 203  Q
    |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  32837105 atttttagagtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaa 32837164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 144 - 203
Target Start/End: Original strand, 37214788 - 37214847
Alignment:
Q  144 atttttagagtctttttatgatatttttgaattcacaagcaagattaagcagcaagaaaa 203  Q
    |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  37214788 atttttagagtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaa 37214847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 122 - 260
Target Start/End: Complemental strand, 40916889 - 40916739
Alignment:
Q  122 tgatgacagtcaatcatttattatttttagagtcttttt---atgatatttttgaattcacaagcaagattaagcagcaaga--------aaaaactgaa 210  Q
    |||||||||||| ||||||  ||||||||||||||||||   || |||||||||| |||||||||||| ||||||| |||||        |||||| |||    
T  40916889 tgatgacagtcagtcatttgctatttttagagtcttttttttatcatatttttgagttcacaagcaagcttaagcaacaagaaaagcaagaaaaaccgaa 40916790  T
Q  211 gaagctgaaaaa-ggcatcgtgtcacgattactgaaaaacgtgacacgatt 260  Q
    ||| |||||||| || ||||||||||||||||||||||| ||| |||||||    
T  40916789 gaaactgaaaaaggggatcgtgtcacgattactgaaaaatgtgtcacgatt 40916739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 145 - 203
Target Start/End: Complemental strand, 22938032 - 22937974
Alignment:
Q  145 tttttagagtctttttatgatatttttgaattcacaagcaagattaagcagcaagaaaa 203  Q
    ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  22938032 tttttagagtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaa 22937974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 244 - 301
Target Start/End: Original strand, 30065756 - 30065813
Alignment:
Q  244 aaaaacgtgacacgattatggaaaccttaatttgggtggtttgttacacaaggaagaa 301  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  30065756 aaaaacgtgacacggttatggaaaccctaatttgggtggtttgttacacaaggaagaa 30065813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 122 - 203
Target Start/End: Original strand, 43490793 - 43490874
Alignment:
Q  122 tgatgacagtcaatcatttattatttttagagtctttttatgatatttttgaattcacaagcaagattaagcagcaagaaaa 203  Q
    |||||||||||  ||||||   |||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||    
T  43490793 tgatgacagtctgtcatttcacatttttagagtctttttatgatatttttgagttcacaaacaagcttaagcagcaagaaaa 43490874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 120 - 203
Target Start/End: Complemental strand, 21828043 - 21827959
Alignment:
Q  120 cctgatgacagtcaatcatttattatttttagagtcttttt-atgatatttttgaattcacaagcaagattaagcagcaagaaaa 203  Q
    |||||||||||||| |||||   |||||||||||||||||| ||||||||||||| ||| |||||||| ||||||||||||||||    
T  21828043 cctgatgacagtcagtcattcgctatttttagagtcttttttatgatatttttgagttcgcaagcaagcttaagcagcaagaaaa 21827959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 122 - 203
Target Start/End: Complemental strand, 21336742 - 21336660
Alignment:
Q  122 tgatgacagtcaatcatttattatttttagagtcttttt-atgatatttttgaattcacaagcaagattaagcagcaagaaaa 203  Q
    |||||||||||| ||||| | |||||||||||||||||| || |||||||||| |||||||||||| ||||||| ||||||||    
T  21336742 tgatgacagtcagtcattcactatttttagagtcttttttattatatttttgagttcacaagcaagcttaagcaacaagaaaa 21336660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 244 - 301
Target Start/End: Complemental strand, 4100230 - 4100173
Alignment:
Q  244 aaaaacgtgacacgattatggaaaccttaatttgggtggtttgttacacaaggaagaa 301  Q
    |||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||    
T  4100230 aaaaacgtgacacgattatgcaaaccctaattttggtggtttgttacacaaggaagaa 4100173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 122 - 191
Target Start/End: Complemental strand, 14017036 - 14016967
Alignment:
Q  122 tgatgacagtcaatcatttattatttttagagtctttttatgatatttttgaattcacaagcaagattaa 191  Q
    |||||||||||| ||||||  |||||||||||||||||||||||| |||||| |||||||||||| ||||    
T  14017036 tgatgacagtcagtcatttgctatttttagagtctttttatgataattttgagttcacaagcaagcttaa 14016967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 261
Target Start/End: Complemental strand, 2837641 - 2837526
Alignment:
Q  156 tttttatgatatttttgaattcacaagcaagattaagcagcaagaaaa--------aactgaagaagctgaaaaa--ggcatcgtgtcacgattactgaa 245  Q
    ||||||||||||||| || |||||||||||| ||||||||||| ||||        |||||||||| ||||| ||  || ||| ||||||||||||||||    
T  2837641 tttttatgatattttggagttcacaagcaagcttaagcagcaataaaagcaagaaaaactgaagaaactgaagaaagggaatcatgtcacgattactgaa 2837542  T
Q  246 aaacgtgacacgatta 261  Q
    ||||||| ||||||||    
T  2837541 aaacgtgtcacgatta 2837526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 33551415 - 33551482
Alignment:
Q  194 agcaagaaaaaactgaagaagctgaaaaaggc-atcgtgtcacgattactgaaaaacgtgacacgatt 260  Q
    |||||||||||||| |||||  |||||||||  ||||||||||||||||||||||||||| |||||||    
T  33551415 agcaagaaaaaactaaagaaagtgaaaaaggggatcgtgtcacgattactgaaaaacgtgtcacgatt 33551482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 295
Target Start/End: Original strand, 33551536 - 33551587
Alignment:
Q  244 aaaaacgtgacacgattatggaaaccttaatttgggtggtttgttacacaag 295  Q
    ||||| |||||||||||||| ||||| |||||||||||||||||||||||||    
T  33551536 aaaaaagtgacacgattatgaaaaccctaatttgggtggtttgttacacaag 33551587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 121 - 191
Target Start/End: Original strand, 17747616 - 17747686
Alignment:
Q  121 ctgatgacagtcaatcatttattatttttagagtctttttatgatatttttgaattcacaagcaagattaa 191  Q
    ||||||||||||| ||||||  |||||||||||||||||||||||| |||||| |||| ||| ||| ||||    
T  17747616 ctgatgacagtcagtcatttgctatttttagagtctttttatgataattttgagttcataagaaagcttaa 17747686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 244 - 295
Target Start/End: Original strand, 7270431 - 7270482
Alignment:
Q  244 aaaaacgtgacacgattatggaaaccttaatttgggtggtttgttacacaag 295  Q
    ||||||||||||||||||| |||||  |||||| ||||||||||||||||||    
T  7270431 aaaaacgtgacacgattatagaaactctaatttaggtggtttgttacacaag 7270482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 244 - 295
Target Start/End: Original strand, 18031912 - 18031963
Alignment:
Q  244 aaaaacgtgacacgattatggaaaccttaatttgggtggtttgttacacaag 295  Q
    ||||||||||||||||| |||||||| ||||||  |||||||||||||||||    
T  18031912 aaaaacgtgacacgattgtggaaaccctaatttcagtggtttgttacacaag 18031963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 298
Target Start/End: Original strand, 17663965 - 17664019
Alignment:
Q  244 aaaaacgtgacacgattatggaaaccttaatttgggtggtttgttacacaaggaa 298  Q
    ||||||||||||| |||    ||||| ||||||||||||||||||||||||||||    
T  17663965 aaaaacgtgacacaatttcataaaccctaatttgggtggtttgttacacaaggaa 17664019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 171
Target Start/End: Original strand, 25329456 - 25329505
Alignment:
Q  122 tgatgacagtcaatcatttattatttttagagtctttttatgatattttt 171  Q
    |||||||||||| |||||   |||||||||||| ||||||||||||||||    
T  25329456 tgatgacagtcagtcattcgctatttttagagtttttttatgatattttt 25329505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 198
Target Start/End: Complemental strand, 28442181 - 28442105
Alignment:
Q  122 tgatgacagtcaatcatttattatttttagagtcttttt-atgatatttttgaattcacaagcaagattaagcagcaa 198  Q
    |||||||||||| ||||| | ||||||||| ||| |||| |||||||||| || |||||||||||| |||| ||||||    
T  28442181 tgatgacagtcagtcattcactatttttagtgtcattttcatgatatttt-gagttcacaagcaagtttaaacagcaa 28442105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 296
Target Start/End: Complemental strand, 18240202 - 18240150
Alignment:
Q  244 aaaaacgtgacacgattatggaaaccttaatttgggtggtttgttacacaagg 296  Q
    ||||| ||||||||||| |||||||| |||||||||||  |||||||| ||||    
T  18240202 aaaaatgtgacacgattctggaaaccctaatttgggtgacttgttacataagg 18240150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 7e-43; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 122 - 260
Target Start/End: Original strand, 4694723 - 4694871
Alignment:
Q  122 tgatgacagtcaatcatttattatttttagagtctttttatgatatttttgaattcacaagcaagattaagcagc---------aagaaaaaactgaaga 212  Q
    |||||| ||||| |||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||         ||||||||||||||||    
T  4694723 tgatgaaagtcagtcatttgttatttttagagtctttctatgatatttttgagttcacaagcaagattaagcagcaagaaaagtaagaaaaaactgaaga 4694822  T
Q  213 agctg-aaaaaggcatcgtgtcacgattactgaaaaacgtgacacgatt 260  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  4694823 agctgaaaaaaggcatcgtgtcacgattactgaaaaacgtgacacgatt 4694871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 122 - 260
Target Start/End: Complemental strand, 45288138 - 45287989
Alignment:
Q  122 tgatgacagtcaatcatttattatttttagagtctttttatgatatttttgaattcacaagcaagattaagcagcaaga---------aaaaactgaaga 212  Q
    |||||||||||| ||||| | ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||         |||| |||||||    
T  45288138 tgatgacagtcagtcattcactatttttagagtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaacaagaaaaagctgaaga 45288039  T
Q  213 agctgaaa--aaggcatcgtgtcacgattactgaaaaacgtgacacgatt 260  Q
    | ||||||  ||||||||||||||| |||||||||||||||| |||||||    
T  45288038 aactgaaaagaaggcatcgtgtcacaattactgaaaaacgtgtcacgatt 45287989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 121 - 260
Target Start/End: Complemental strand, 9865643 - 9865494
Alignment:
Q  121 ctgatgacagtcaatcatttattatttttagagtctttttatgatatttttgaattcacaagcaagattaagcagcaaga--------aaaaactgaaga 212  Q
    ||||||||||||| |||||   ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||        ||||||||||||    
T  9865643 ctgatgacagtcagtcattcgctatttttagagtctttttatgatatttttgagttcacaagcaagattaagcagcaagaaaagcaagaaaaactgaaga 9865544  T
Q  213 agctgaaaaa--ggcatcgtgtcacgattactgaaaaacgtgacacgatt 260  Q
    |  |||||||   | ||||||||||||||| |||||||||||||||||||    
T  9865543 aaatgaaaaaagaggatcgtgtcacgattattgaaaaacgtgacacgatt 9865494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 122 - 204
Target Start/End: Complemental strand, 45291474 - 45291392
Alignment:
Q  122 tgatgacagtcaatcatttattatttttagagtctttttatgatatttttgaattcacaagcaagattaagcagcaagaaaaa 204  Q
    |||||||||||| ||||| | ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  45291474 tgatgacagtcagtcattcactatttttagagtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaa 45291392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 122 - 203
Target Start/End: Complemental strand, 4596924 - 4596843
Alignment:
Q  122 tgatgacagtcaatcatttattatttttagagtctttttatgatatttttgaattcacaagcaagattaagcagcaagaaaa 203  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||  ||||||| ||||||||||| ||||||||    
T  4596924 tgatgacagtcaatcattcgttatttttagagtctttttatgatatttttgagctcacaagaaagattaagcaacaagaaaa 4596843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 122 - 203
Target Start/End: Complemental strand, 20081640 - 20081559
Alignment:
Q  122 tgatgacagtcaatcatttattatttttagagtctttttatgatatttttgaattcacaagcaagattaagcagcaagaaaa 203  Q
    |||||||||||| ||||| | |||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||    
T  20081640 tgatgacagtcagtcattcactatttttagagtgtttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaa 20081559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 122 - 260
Target Start/End: Original strand, 9080376 - 9080525
Alignment:
Q  122 tgatgacagtcaatcatttattatttttagagtctttttatgatatttttgaattcacaagcaagattaagcagcaaga--------aaaaactgaagaa 213  Q
    |||||||||| | |||||  ||||||||||||||||||||||  |||||||| |||||||||||| |||||||||||||        |||||||||||||    
T  9080376 tgatgacagttagtcattcgttatttttagagtctttttatgtaatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaactgaagaa 9080475  T
Q  214 gctgaaaaa--ggcatcgtgtcacgatt-actgaaaaacgtgacacgatt 260  Q
     || |||||  ||||||||||||| ||| ||||||||||||| |||||||    
T  9080476 actaaaaaaagggcatcgtgtcactattaactgaaaaacgtgtcacgatt 9080525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 122 - 203
Target Start/End: Original strand, 17729973 - 17730054
Alignment:
Q  122 tgatgacagtcaatcatttattatttttagagtctttttatgatatttttgaattcacaagcaagattaagcagcaagaaaa 203  Q
    |||||||||||| || || | ||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||    
T  17729973 tgatgacagtcagtctttcactatttttagagtccttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaa 17730054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 121 - 203
Target Start/End: Original strand, 8276011 - 8276093
Alignment:
Q  121 ctgatgacagtcaatcatttattatttttagagtctttttatgatatttttgaattcacaagcaagattaagcagcaagaaaa 203  Q
    ||||||||||||  |||||   ||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||    
T  8276011 ctgatgacagtctgtcattccatatttttagagtctttttatgatatttttgagttcacaagcaagctcaagcagcaagaaaa 8276093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 244 - 301
Target Start/End: Original strand, 4694925 - 4694982
Alignment:
Q  244 aaaaacgtgacacgattatggaaaccttaatttgggtggtttgttacacaaggaagaa 301  Q
    ||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||    
T  4694925 aaaaacgtgacacaattatggaaaccctaatttgggtggtttcttacacaaggaagaa 4694982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 244 - 301
Target Start/End: Complemental strand, 9865440 - 9865383
Alignment:
Q  244 aaaaacgtgacacgattatggaaaccttaatttgggtggtttgttacacaaggaagaa 301  Q
    ||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  9865440 aaaaatgtgacacgattatggaaaccctaattttggtggtttgttacacaaggaagaa 9865383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 10344637 - 10344697
Alignment:
Q  143 tatttttagagtctttttatgatatttttgaattcacaagcaagattaagcagcaagaaaa 203  Q
    ||||||||||||||| |||||| |||||||| |||||||||||| ||||||||||||||||    
T  10344637 tatttttagagtcttcttatgaaatttttgagttcacaagcaagcttaagcagcaagaaaa 10344697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 244 - 295
Target Start/End: Original strand, 17730217 - 17730268
Alignment:
Q  244 aaaaacgtgacacgattatggaaaccttaatttgggtggtttgttacacaag 295  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  17730217 aaaaacgtgacacgattatggaaaccctaatttaggtggtttgttacacaag 17730268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 244 - 298
Target Start/End: Complemental strand, 9273833 - 9273779
Alignment:
Q  244 aaaaacgtgacacgattatggaaaccttaatttgggtggtttgttacacaaggaa 298  Q
    |||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||    
T  9273833 aaaaacgtgacacgattacggaaaccctaatttgagtggtttgttacacaaggaa 9273779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 295
Target Start/End: Original strand, 9080579 - 9080630
Alignment:
Q  244 aaaaacgtgacacgattatggaaaccttaatttgggtggtttgttacacaag 295  Q
    ||||||||||||| |||||||||||| ||||||| |||||||||||||||||    
T  9080579 aaaaacgtgacacaattatggaaaccctaatttgtgtggtttgttacacaag 9080630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 203
Target Start/End: Complemental strand, 9274034 - 9273953
Alignment:
Q  122 tgatgacagtcaatcatttattatttttagagtctttttatgatatttttgaattcacaagcaagattaagcagcaagaaaa 203  Q
    |||||||||||  ||||||   ||||| | ||||||||||||||||||| || |||||||||||| ||||||| ||||||||    
T  9274034 tgatgacagtccgtcatttcacattttcaaagtctttttatgatattttggagttcacaagcaagcttaagcaccaagaaaa 9273953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 103
Target Start/End: Original strand, 22620863 - 22620946
Alignment:
Q  20 ctctagatccttctaaaaacacgact--tcatctaatataacatggcctattttattataatggaactatcttgattcattacatt 103  Q
    ||||||||||||||||||||| ||||  || |||||||||||  || ||||| |||| ||||||| ||||||| ||||||||||||    
T  22620863 ctctagatccttctaaaaacatgactcatcctctaatataac--gggctattatattctaatggacctatcttaattcattacatt 22620946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 198
Target Start/End: Original strand, 4542074 - 4542150
Alignment:
Q  122 tgatgacagtcaatcatttattatttttagagtc-tttttatgatatttttgaattcacaagcaagattaagcagcaa 198  Q
    |||||||||||| ||||| | ||||||||| ||| |||| |||||| |||||| |||||||||||| |||| ||||||    
T  4542074 tgatgacagtcagtcattcactatttttagtgtcattttcatgata-ttttgagttcacaagcaagtttaaacagcaa 4542150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 198
Target Start/End: Original strand, 10431386 - 10431462
Alignment:
Q  122 tgatgacagtcaatcatttattatttttagagtc-tttttatgatatttttgaattcacaagcaagattaagcagcaa 198  Q
    |||||||||||| ||||| | ||||||||| ||| |||| |||||| |||||| |||||||||||| |||| ||||||    
T  10431386 tgatgacagtcagtcattcactatttttagtgtcattttcatgata-ttttgagttcacaagcaagtttaaacagcaa 10431462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 3e-36; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 122 - 260
Target Start/End: Complemental strand, 21019367 - 21019228
Alignment:
Q  122 tgatgacagtcaatcatttattatttttagagtctttttatgatatttttgaattcacaagcaagattaagcagcaagaaaaaactgaagaagctgaaaa 221  Q
    |||||||||||| |||||   ||||||||||||||||| ||||||||||||| ||| ||| |||| |||||||||||||||||||||||||| || ||||    
T  21019367 tgatgacagtcagtcattcgctatttttagagtctttt-atgatatttttgagttcgcaaccaagcttaagcagcaagaaaaaactgaagaaactaaaaa 21019269  T
Q  222 a--ggcatcgtgtcacgattactgaaaaacgtgacacgatt 260  Q
    |  |||||||||||||||||||||||||||||| |||||||    
T  21019268 aagggcatcgtgtcacgattactgaaaaacgtgtcacgatt 21019228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 122 - 260
Target Start/End: Original strand, 2404722 - 2404870
Alignment:
Q  122 tgatgacagtcaatcatttattatttttagagtctttttatgatatttttgaattcacaagcaagattaagcagcaagaa---------aaaactgaaga 212  Q
    |||||||||||| |||||   |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||         |||||||||||    
T  2404722 tgatgacagtcagtcattcgctatttttagagtctttttataatatttttgagttcacaagcaagattaagcagcaagaaaagcaagataaaactgaaga 2404821  T
Q  213 agctg-aaaaaggcatcgtgtcacgattactgaaaaacgtgacacgatt 260  Q
    ||||| |||||||||||||||||| ||| ||||||||||||||| ||||    
T  2404822 agctgaaaaaaggcatcgtgtcacaatttctgaaaaacgtgacatgatt 2404870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 122 - 260
Target Start/End: Complemental strand, 21108393 - 21108245
Alignment:
Q  122 tgatgacagtcaatcatttattatttttagagtctttttatgatatttttgaattcacaagcaagattaagcagcaaga--------aaaaactgaagaa 213  Q
    |||||||||||| |||||   | ||||||||||||| |||||||||||||||| ||| |||||||||||||| ||||||        |||||||||||||    
T  21108393 tgatgacagtcagtcattcgctctttttagagtcttcttatgatatttttgaactcaaaagcaagattaagctgcaagaaaagcaagaaaaactgaagaa 21108294  T
Q  214 gctgaaaaa--ggcatcgtgtcacgattactgaaaaacgtgacacgatt 260  Q
     ||||||||  || ||||||||||||||| ||||||| ||| |||||||    
T  21108293 actgaaaaaaggggatcgtgtcacgattattgaaaaatgtgtcacgatt 21108245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 244 - 301
Target Start/End: Complemental strand, 41059010 - 41058953
Alignment:
Q  244 aaaaacgtgacacgattatggaaaccttaatttgggtggtttgttacacaaggaagaa 301  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  41059010 aaaaacgtgacacgattatggaaaccctaattttggtggtttgttacacaaggaagaa 41058953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 122 - 260
Target Start/End: Original strand, 42021721 - 42021871
Alignment:
Q  122 tgatgacagtcaatcatttattatttttagagtctttttatgatatttttgaattcacaagcaagattaagcagcaa----------gaaaaaactgaag 211  Q
    ||||||||||||||||||   |||||||||||||||||||| |||||  ||| |||||||||||| |||||||||||           |||||| |||||    
T  42021721 tgatgacagtcaatcattcgctatttttagagtctttttataatattactgagttcacaagcaagtttaagcagcaataaaagcaagaaaaaaattgaag 42021820  T
Q  212 aagctgaaa--aaggcatcgtgtcacgattactgaaaaacgtgacacgatt 260  Q
    || ||||||  | |||||||||||||||||||||||||| ||| |||||||    
T  42021821 aaactgaaaagagggcatcgtgtcacgattactgaaaaatgtgtcacgatt 42021871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 121 - 203
Target Start/End: Complemental strand, 41059235 - 41059152
Alignment:
Q  121 ctgatgacagtcaatcatttattatttttagagtcttttt-atgatatttttgaattcacaagcaagattaagcagcaagaaaa 203  Q
    ||||||||||||| |||||   |||||||||||||||||| ||||||||||||| ||| |||||||| ||||||||||||||||    
T  41059235 ctgatgacagtcagtcattcgctatttttagagtcttttttatgatatttttgagttcgcaagcaagcttaagcagcaagaaaa 41059152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 244 - 291
Target Start/End: Complemental strand, 21108191 - 21108144
Alignment:
Q  244 aaaaacgtgacacgattatggaaaccttaatttgggtggtttgttaca 291  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||    
T  21108191 aaaaacgtgacacgattatggaaaccctaatttgggtggtttgttaca 21108144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 121 - 191
Target Start/End: Complemental strand, 45961708 - 45961638
Alignment:
Q  121 ctgatgacagtcaatcatttattatttttagagtctttttatgatatttttgaattcacaagcaagattaa 191  Q
    ||||||||||||| ||||||  ||||||||||||||| |||||||| |||||| |||||||||||| ||||    
T  45961708 ctgatgacagtcagtcatttgctatttttagagtcttgttatgataattttgagttcacaagcaagcttaa 45961638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 244 - 301
Target Start/End: Original strand, 2404924 - 2404981
Alignment:
Q  244 aaaaacgtgacacgattatggaaaccttaatttgggtggtttgttacacaaggaagaa 301  Q
    |||||||||||||||||||||||||| |||||| ||| ||||||||||||||| ||||    
T  2404924 aaaaacgtgacacgattatggaaaccctaatttcggttgtttgttacacaaggcagaa 2404981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 123 - 191
Target Start/End: Complemental strand, 27537212 - 27537144
Alignment:
Q  123 gatgacagtcaatcatttattatttttagagtctttttatgatatttttgaattcacaagcaagattaa 191  Q
    ||||||||||| ||||||  |||||||| ||||||||||||||| |||||| |||||||||||| ||||    
T  27537212 gatgacagtcagtcatttgctatttttatagtctttttatgataattttgagttcacaagcaagcttaa 27537144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 144 - 203
Target Start/End: Complemental strand, 29644286 - 29644227
Alignment:
Q  144 atttttagagtctttttatgatatttttgaattcacaagcaagattaagcagcaagaaaa 203  Q
    |||| ||||||||||||||||||||||||| |||||||||||  ||||||||||| ||||    
T  29644286 atttatagagtctttttatgatatttttgagttcacaagcaaacttaagcagcaaaaaaa 29644227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 244 - 295
Target Start/End: Complemental strand, 21019173 - 21019122
Alignment:
Q  244 aaaaacgtgacacgattatggaaaccttaatttgggtggtttgttacacaag 295  Q
    ||||| |||||||||||||||||||| || ||||||||| ||||||||||||    
T  21019173 aaaaatgtgacacgattatggaaaccctagtttgggtgggttgttacacaag 21019122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 191
Target Start/End: Original strand, 2793299 - 2793368
Alignment:
Q  122 tgatgacagtcaatcatttattatttttagagtcttttt-atgatatttttgaattcacaagcaagattaa 191  Q
    |||||||||||| || || | |||||||||||||||||| |||||| |||||| |||||||||||| ||||    
T  2793299 tgatgacagtcagtcgttcactatttttagagtctttttaatgata-ttttgagttcacaagcaagtttaa 2793368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 159
Target Start/End: Original strand, 49147113 - 49147150
Alignment:
Q  122 tgatgacagtcaatcatttattatttttagagtctttt 159  Q
    |||||||||||||||||| | |||||||||||||||||    
T  49147113 tgatgacagtcaatcattcactatttttagagtctttt 49147150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 260
Target Start/End: Complemental strand, 41059096 - 41059064
Alignment:
Q  228 cgtgtcacgattactgaaaaacgtgacacgatt 260  Q
    ||||||||||||||||||||||||| |||||||    
T  41059096 cgtgtcacgattactgaaaaacgtgtcacgatt 41059064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 6e-34; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 121 - 260
Target Start/End: Original strand, 19819949 - 19820089
Alignment:
Q  121 ctgatgacagtcaatcatttattatttttagagtctttttatgata-tttttgaattcacaagcaagattaagcagcaagaaaaaactgaagaagctgaa 219  Q
    ||||||||||||| |||||   |||||||| ||||||||||||||| ||||||| |||||||||||||||||| |||||| ||||||||||||| || ||    
T  19819949 ctgatgacagtcagtcattcgctatttttaaagtctttttatgatattttttgagttcacaagcaagattaagtagcaag-aaaaactgaagaaactaaa 19820047  T
Q  220 aaa-ggcatcgtgtcacgattactgaaaaacgtgacacgatt 260  Q
    ||| || ||||||||||||||||||||||||||| |||||||    
T  19820048 aaaggggatcgtgtcacgattactgaaaaacgtgtcacgatt 19820089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 121 - 260
Target Start/End: Complemental strand, 27677967 - 27677817
Alignment:
Q  121 ctgatgacagtcaatcatttattatttttagagtcttttt-atgatatttttgaattcacaagcaagattaagcagcaag--------aaaaaactgaag 211  Q
    ||||||||||||| | ||| | |||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||        ||||||||||||    
T  27677967 ctgatgacagtcagttattcactatttttagagtcttttttatgatatttttgagttcacaatcaagattaagcagcaagaaaagcaaaaaaaactgaag 27677868  T
Q  212 aagctgaaaaa--ggcatcgtgtcacgattactgaaaaacgtgacacgatt 260  Q
    || ||||||||  || | |||||||||||||||||||||||||||||||||    
T  27677867 aaactgaaaaaaggggaccgtgtcacgattactgaaaaacgtgacacgatt 27677817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 121 - 204
Target Start/End: Complemental strand, 53010459 - 53010376
Alignment:
Q  121 ctgatgacagtcaatcatttattatttttagagtctttttatgatatttttgaattcacaagcaagattaagcagcaagaaaaa 204  Q
    ||||||| ||||| ||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  53010459 ctgatgatagtcagtcattcattatttttagagtctttttatgatatttttgagttcacaagtaagattaagcagcaagaaaaa 53010376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 122 - 260
Target Start/End: Complemental strand, 27692025 - 27691885
Alignment:
Q  122 tgatgacagtcaatcatttattatttttagagtcttttt-atgatatttttgaattcacaagcaagattaagcagcaagaaaaaactgaagaagctgaaa 220  Q
    |||||||| | | ||||| | |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||    ||| || ||||||    
T  27692025 tgatgacaattagtcattcactatttttagagtcttttttacgatatttttgaattcacaagcaagattaagcagcaagaaaagcaagaa-aaactgaaa 27691927  T
Q  221 aa--ggcatcgtgtcacgattactgaaaaacgtgacacgatt 260  Q
    ||  || || ||||||||||||||||||||||||||||||||    
T  27691926 aaaggggattgtgtcacgattactgaaaaacgtgacacgatt 27691885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 122 - 260
Target Start/End: Complemental strand, 15430766 - 15430616
Alignment:
Q  122 tgatgacagtcaatcatttattatttttagagtcttttt-atgatatttttgaattcacaagcaagattaagcagcaaga--------aaaaactgaaga 212  Q
    |||||||||||| |||||  ||||||| ||||||||||| ||||||||||||| |||||||||||| |||||||||||||        |||||||| |||    
T  15430766 tgatgacagtcagtcattcgttattttcagagtcttttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaagcaagaaaaactggaga 15430667  T
Q  213 agctgaaaaa---ggcatcgtgtcacgattactgaaaaacgtgacacgatt 260  Q
    | ||||||||   || |||||||||| ||||||||||||||||||||||||    
T  15430666 aactgaaaaaacggggatcgtgtcacaattactgaaaaacgtgacacgatt 15430616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 122 - 260
Target Start/End: Complemental strand, 15437380 - 15437230
Alignment:
Q  122 tgatgacagtcaatcatttattatttttagagtcttttt-atgatatttttgaattcacaagcaagattaagcagcaaga--------aaaaactgaaga 212  Q
    |||||||||||| |||||  ||||||| ||||||||||| ||||||||||||| |||||||||||| |||||||||||||        |||||||| |||    
T  15437380 tgatgacagtcagtcattcgttattttcagagtcttttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaagcaagaaaaactggaga 15437281  T
Q  213 agctgaaaaa---ggcatcgtgtcacgattactgaaaaacgtgacacgatt 260  Q
    | ||||||||   || |||||||||| ||||||||||||||||||||||||    
T  15437280 aactgaaaaaacggggatcgtgtcacaattactgaaaaacgtgacacgatt 15437230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 122 - 260
Target Start/End: Original strand, 44164001 - 44164142
Alignment:
Q  122 tgatgacagtcaatcatttattatttttagagtctttt-tatgatatttttgaattcacaagcaagattaagcagcaagaaaaaactgaagaagctgaaa 220  Q
    |||||||||||| ||||| | |||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||     ||||||   |||    
T  44164001 tgatgacagtcagtcattcactatttttaaagtcttttttatgatatttttgagttcacaagcaagattaagcagcaagaaaa---gcaagaagggaaaa 44164097  T
Q  221 aa-----ggcatcgtgtcacgattactgaaaaacgtgacacgatt 260  Q
    ||     || |||||||||||||||||||||||||||||||||||    
T  44164098 aaaaggggggatcgtgtcacgattactgaaaaacgtgacacgatt 44164142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 122 - 260
Target Start/End: Original strand, 19826701 - 19826850
Alignment:
Q  122 tgatgacagtcaatcatttattatttttagagtctttttatgata-tttttgaattcacaagcaagattaagcagcaaga--------aaaaactgaaga 212  Q
    |||||||||||| |||||   |||||||||||||||||||||| | ||||||| |||||||| ||||||||||| |||||        ||||||||||||    
T  19826701 tgatgacagtcagtcattcgctatttttagagtctttttatgaaattttttgagttcacaagtaagattaagcaacaagaaaagcaagaaaaactgaaga 19826800  T
Q  213 agctgaaaaa--ggcatcgtgtcacgattactgaaaaacgtgacacgatt 260  Q
    | ||||||||  || ||||||||||||||||||||||||||| |||||||    
T  19826801 aactgaaaaaaggggatcgtgtcacgattactgaaaaacgtgtcacgatt 19826850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 122 - 203
Target Start/End: Complemental strand, 24045057 - 24044976
Alignment:
Q  122 tgatgacagtcaatcatttattatttttagagtctttttatgatatttttgaattcacaagcaagattaagcagcaagaaaa 203  Q
    |||||||||||| |||||  ||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||    
T  24045057 tgatgacagtcagtcattcgttatttttagagtctttttttgatatttttgagttcacaaacaagattaagcagcaagaaaa 24044976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 122 - 260
Target Start/End: Complemental strand, 52007431 - 52007292
Alignment:
Q  122 tgatgacagtcaatcatttattatttttagagtctttttatgatatttttgaattcacaagcaagattaagcagcaagaaaaaactgaagaagctga--a 219  Q
    |||||||||||| |||||   |||||||||||||||||||||||||| |||| |||| ||||||| ||||||||||||||||| | |||||| ||||  |    
T  52007431 tgatgacagtcagtcattcgctatttttagagtctttttatgatattgttgagttcaaaagcaagcttaagcagcaagaaaaatc-gaagaaactgaaga 52007333  T
Q  220 aaaggcatcgtgtcacgattactgaaaaacgtgacacgatt 260  Q
    || || ||| ||||||||| ||| ||||||||| |||||||    
T  52007332 aagggaatcatgtcacgataactaaaaaacgtgtcacgatt 52007292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 122 - 203
Target Start/End: Original strand, 3718336 - 3718417
Alignment:
Q  122 tgatgacagtcaatcatttattatttttagagtctttttatgatatttttgaattcacaagcaagattaagcagcaagaaaa 203  Q
    |||||||||||| ||||| | |||||||||||| |||||||||||||||||| |||||||||||| ||||||| ||||||||    
T  3718336 tgatgacagtcactcattcactatttttagagtatttttatgatatttttgagttcacaagcaagcttaagcaacaagaaaa 3718417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 40794213 - 40794273
Alignment:
Q  143 tatttttagagtctttttatgatatttttgaattcacaagcaagattaagcagcaagaaaa 203  Q
    ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  40794213 tatttttagagtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaa 40794273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 144 - 203
Target Start/End: Original strand, 14571048 - 14571107
Alignment:
Q  144 atttttagagtctttttatgatatttttgaattcacaagcaagattaagcagcaagaaaa 203  Q
    |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  14571048 atttttagagtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaa 14571107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 122 - 252
Target Start/End: Original strand, 35509201 - 35509320
Alignment:
Q  122 tgatgacagtcaatcatttattatttttagagtctttttatgatatttttgaattcacaagcaagattaagcagcaagaaaaaactgaagaagctgaaaa 221  Q
    |||| ||||||| |||||  ||||||||||  ||||| |||||||||||||| |||||||||||||||||||| |||| ||||||||||||||           
T  35509201 tgataacagtcagtcattcgttatttttag--tctttatatgatatttttgagttcacaagcaagattaagcaacaag-aaaaactgaagaag------- 35509290  T
Q  222 aggcatcgtgtcacgattactgaaaaacgtg 252  Q
     || |||||||||||||||||||||||||||    
T  35509291 -gggatcgtgtcacgattactgaaaaacgtg 35509320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 122 - 203
Target Start/End: Original strand, 12782106 - 12782187
Alignment:
Q  122 tgatgacagtcaatcatttattatttttagagtctttttatgatatttttgaattcacaagcaagattaagcagcaagaaaa 203  Q
    |||||||||||| |||||   ||||||||||||| ||||||||||||||||| || ||||||||| ||||||||||||||||    
T  12782106 tgatgacagtcagtcattcgctatttttagagtcattttatgatatttttgagtttacaagcaagcttaagcagcaagaaaa 12782187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 244 - 301
Target Start/End: Complemental strand, 27677763 - 27677706
Alignment:
Q  244 aaaaacgtgacacgattatggaaaccttaatttgggtggtttgttacacaaggaagaa 301  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  27677763 aaaaacgtgacacgattatggaaaccctaattttggtggtttgttacacaaggaagaa 27677706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 21419000 - 21419060
Alignment:
Q  143 tatttttagagtctttttatgatatttttgaattcacaagcaagattaagcagcaagaaaa 203  Q
    ||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  21419000 tatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaa 21419060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 121 - 191
Target Start/End: Original strand, 29323978 - 29324048
Alignment:
Q  121 ctgatgacagtcaatcatttattatttttagagtctttttatgatatttttgaattcacaagcaagattaa 191  Q
    ||||||||||||| ||||||  |||||||||||||||||||||||| |||||| |||||||||||| ||||    
T  29323978 ctgatgacagtcagtcatttgctatttttagagtctttttatgataattttgagttcacaagcaagcttaa 29324048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 244 - 301
Target Start/End: Complemental strand, 24044849 - 24044792
Alignment:
Q  244 aaaaacgtgacacgattatggaaaccttaatttgggtggtttgttacacaaggaagaa 301  Q
    |||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||    
T  24044849 aaaaacgtgacacgattatggaaaccctaattttggtagtttgttacacaaggaagaa 24044792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 244 - 301
Target Start/End: Complemental strand, 27691831 - 27691774
Alignment:
Q  244 aaaaacgtgacacgattatggaaaccttaatttgggtggtttgttacacaaggaagaa 301  Q
    |||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||    
T  27691831 aaaaacgtgacacgattatgaaaaccctaattttggtggtttgttacacaaggaagaa 27691774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 122 - 191
Target Start/End: Complemental strand, 44809904 - 44809835
Alignment:
Q  122 tgatgacagtcaatcatttattatttttagagtctttttatgatatttttgaattcacaagcaagattaa 191  Q
    |||||||||||| ||||||  |||||||||||||||||||||||| |||||| |||||||||||| ||||    
T  44809904 tgatgacagtcagtcatttgctatttttagagtctttttatgataattttgagttcacaagcaagcttaa 44809835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 244 - 295
Target Start/End: Original strand, 19820143 - 19820194
Alignment:
Q  244 aaaaacgtgacacgattatggaaaccttaatttgggtggtttgttacacaag 295  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  19820143 aaaaacgtgacacgattatggaaaccctaattttggtggtttgttacacaag 19820194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 244 - 295
Target Start/End: Original strand, 21419202 - 21419253
Alignment:
Q  244 aaaaacgtgacacgattatggaaaccttaatttgggtggtttgttacacaag 295  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  21419202 aaaaacgtgacacgattatggaaaccctaatttaggtggtttgttacacaag 21419253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 244 - 295
Target Start/End: Original strand, 35509379 - 35509430
Alignment:
Q  244 aaaaacgtgacacgattatggaaaccttaatttgggtggtttgttacacaag 295  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  35509379 aaaaacgtgacacgattaaggaaaccctaatttgggtggtttgttacacaag 35509430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 244 - 295
Target Start/End: Complemental strand, 52007238 - 52007187
Alignment:
Q  244 aaaaacgtgacacgattatggaaaccttaatttgggtggtttgttacacaag 295  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  52007238 aaaaacgtgacacgattatggaaaccctaattttggtggtttgttacacaag 52007187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 122 - 203
Target Start/End: Original strand, 27013229 - 27013311
Alignment:
Q  122 tgatgacagtcaatcatttattatttttagagtctttt-tatgatatttttgaattcacaagcaagattaagcagcaagaaaa 203  Q
    |||||||||||| |||||   ||||||||||||||||| |||||||||||||| |||||| ||||| ||||||| ||||||||    
T  27013229 tgatgacagtcagtcattcgctatttttagagtcttttttatgatatttttgagttcacaggcaagcttaagcaacaagaaaa 27013311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 244 - 301
Target Start/End: Complemental strand, 15430562 - 15430505
Alignment:
Q  244 aaaaacgtgacacgattatggaaaccttaatttgggtggtttgttacacaaggaagaa 301  Q
    ||||||||||||| |||||||||||| |||||| |||||||| |||||||||||||||    
T  15430562 aaaaacgtgacacaattatggaaaccataattttggtggttttttacacaaggaagaa 15430505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 244 - 301
Target Start/End: Complemental strand, 15437176 - 15437119
Alignment:
Q  244 aaaaacgtgacacgattatggaaaccttaatttgggtggtttgttacacaaggaagaa 301  Q
    ||||||||||||| |||||||||||| |||||| |||||||| |||||||||||||||    
T  15437176 aaaaacgtgacacaattatggaaaccataattttggtggttttttacacaaggaagaa 15437119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 244 - 301
Target Start/End: Original strand, 44164196 - 44164253
Alignment:
Q  244 aaaaacgtgacacgattatggaaaccttaatttgggtggtttgttacacaaggaagaa 301  Q
    ||||| |||||||||||||||||||| ||||||  |||||||||||||||||||||||    
T  44164196 aaaaatgtgacacgattatggaaaccctaattttagtggtttgttacacaaggaagaa 44164253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 127 - 191
Target Start/End: Complemental strand, 34320839 - 34320775
Alignment:
Q  127 acagtcaatcatttattatttttagagtctttttatgatatttttgaattcacaagcaagattaa 191  Q
    ||||||| ||||||  |||||||||||||||||||||||| |||||| |||||||||||| ||||    
T  34320839 acagtcagtcatttgctatttttagagtctttttatgataattttgagttcacaagcaagcttaa 34320775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 295
Target Start/End: Original strand, 3718538 - 3718589
Alignment:
Q  244 aaaaacgtgacacgattatggaaaccttaatttgggtggtttgttacacaag 295  Q
    ||||| |||||||||||||||||||| |||||| ||||||||||||||||||    
T  3718538 aaaaatgtgacacgattatggaaaccctaatttaggtggtttgttacacaag 3718589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 144 - 203
Target Start/End: Original strand, 5680491 - 5680550
Alignment:
Q  144 atttttagagtctttttatgatatttttgaattcacaagcaagattaagcagcaagaaaa 203  Q
    |||||||||||||||||||||||||||||| |||| ||||||| |||| || ||||||||    
T  5680491 atttttagagtctttttatgatatttttgagttcataagcaagcttaaacaacaagaaaa 5680550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 295
Target Start/End: Original strand, 19826904 - 19826955
Alignment:
Q  244 aaaaacgtgacacgattatggaaaccttaatttgggtggtttgttacacaag 295  Q
    |||||||||||||||||||||||||| ||||||  |||||||||||||||||    
T  19826904 aaaaacgtgacacgattatggaaaccctaatttttgtggtttgttacacaag 19826955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 198
Target Start/End: Original strand, 15431164 - 15431240
Alignment:
Q  122 tgatgacagtcaatcatttattatttttagagtcttttt-atgatatttttgaattcacaagcaagattaagcagcaa 198  Q
    |||||||||||| ||||| | |||||||||||||||||| |||||| |||||| |||||||||||| |||| ||||||    
T  15431164 tgatgacagtcagtcattcactatttttagagtctttttcatgata-ttttgagttcacaagcaagtttaaacagcaa 15431240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 198
Target Start/End: Original strand, 15437778 - 15437854
Alignment:
Q  122 tgatgacagtcaatcatttattatttttagagtcttttt-atgatatttttgaattcacaagcaagattaagcagcaa 198  Q
    |||||||||||| ||||| | |||||||||||||||||| |||||| |||||| |||||||||||| |||| ||||||    
T  15437778 tgatgacagtcagtcattcactatttttagagtctttttcatgata-ttttgagttcacaagcaagtttaaacagcaa 15437854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 244 - 291
Target Start/End: Original strand, 12782318 - 12782365
Alignment:
Q  244 aaaaacgtgacacgattatggaaaccttaatttgggtggtttgttaca 291  Q
    |||||||||||||||||||||||||| |||||| ||| ||||||||||    
T  12782318 aaaaacgtgacacgattatggaaaccctaatttaggttgtttgttaca 12782365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 244 - 295
Target Start/End: Original strand, 40794416 - 40794467
Alignment:
Q  244 aaaaacgtgacacgattatggaaaccttaatttgggtggtttgttacacaag 295  Q
    |||||||||||| ||||||||||||| |||||| ||||||||||| ||||||    
T  40794416 aaaaacgtgacaagattatggaaaccctaatttaggtggtttgttgcacaag 40794467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 122 - 173
Target Start/End: Original strand, 49269735 - 49269786
Alignment:
Q  122 tgatgacagtcaatcatttattatttttagagtctttttatgatatttttga 173  Q
    |||||||||||| ||||||   ||||||||||| ||||||||||||||||||    
T  49269735 tgatgacagtcagtcattttacatttttagagtttttttatgatatttttga 49269786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 260
Target Start/End: Complemental strand, 24044937 - 24044903
Alignment:
Q  226 atcgtgtcacgattactgaaaaacgtgacacgatt 260  Q
    ||||||||||||||||||||||| |||||||||||    
T  24044937 atcgtgtcacgattactgaaaaatgtgacacgatt 24044903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 198
Target Start/End: Complemental strand, 3798796 - 3798720
Alignment:
Q  122 tgatgacagtcaatcatttattatttttagagtcttttt-atgatatttttgaattcacaagcaagattaagcagcaa 198  Q
    |||||||||||| ||||| | ||||||||| ||| |||| |||||||||| || |||||||||||| |||| ||||||    
T  3798796 tgatgacagtcagtcattcactatttttagtgtcattttcatgatatttt-gagttcacaagcaagtttaaacagcaa 3798720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 296
Target Start/End: Complemental strand, 8875470 - 8875418
Alignment:
Q  244 aaaaacgtgacacgattatggaaaccttaatttgggtggtttgttacacaagg 296  Q
    ||||||||||||||||| |||||| | |||||  ||| |||||||||||||||    
T  8875470 aaaaacgtgacacgattttggaaatcctaattcaggttgtttgttacacaagg 8875418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 122 - 260
Target Start/End: Original strand, 10880776 - 10880924
Alignment:
Q  122 tgatgacagtcaatcatttattatttttagagtctttttatgatatttttgaattcacaagcaagattaagcagcaagaa---------aaaactgaaga 212  Q
    |||||||||||| | ||||  ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||         |||  ||||||    
T  10880776 tgatgacagtcagttatttgctatttttagagtctttttatgatatttttgagttcacaagcaagattaagcagcaagaaaagcaagataaagttgaaga 10880875  T
Q  213 agctg-aaaaaggcatcgtgtcacgattactgaaaaacgtgacacgatt 260  Q
    ||||| ||||||||||||||||||||||  |||||||||||||||||||    
T  10880876 agctgaaaaaaggcatcgtgtcacgatttatgaaaaacgtgacacgatt 10880924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 121 - 260
Target Start/End: Complemental strand, 29344774 - 29344624
Alignment:
Q  121 ctgatgacagtcaatcatttattatttttagagtcttt-ttatgatatttttgaattcacaagcaagattaagcagcaaga--------aaaaactgaag 211  Q
    ||||||||||||| ||||| | |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||        ||||| |||||    
T  29344774 ctgatgacagtcagtcattcactatttttagagtctttcttatgatatttttgagttcacaagcaagattaagcagcaagaaaagcaagaaaaattgaag 29344675  T
Q  212 aagctgaaaaa--ggcatcgtgtcacgattactgaaaaacgtgacacgatt 260  Q
    || ||||||||  || ||||||||||||||| |||||||||||||||||||    
T  29344674 aaactgaaaaaaggggatcgtgtcacgattattgaaaaacgtgacacgatt 29344624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 122 - 260
Target Start/End: Original strand, 53814971 - 53815120
Alignment:
Q  122 tgatgacagtcaatcatttattatttttagagtctttttatgatatttttgaattcacaagcaagattaagcag---------caagaaaaaactgaaga 212  Q
    |||||||||||| ||||| | ||||||||||||||||||||||||||||||| |||||||||||| ||||||||         ||||||||| |||||||    
T  53814971 tgatgacagtcagtcattcactatttttagagtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaacaagaaaaagctgaaga 53815070  T
Q  213 agctgaaa--aaggcatcgtgtcacgattactgaaaaacgtgacacgatt 260  Q
    | ||||||  ||||||||||||||| |||||||||||||||| |||||||    
T  53815071 aactgaaaagaaggcatcgtgtcacaattactgaaaaacgtgtcacgatt 53815120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 122 - 260
Target Start/End: Complemental strand, 34984758 - 34984602
Alignment:
Q  122 tgatgacagtcaatcatttattatttttagagtctttttatgatatttttgaattcacaagcaagattaagcagcaag------------------aaaa 203  Q
    |||||||||||| |||||  |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||                  ||||    
T  34984758 tgatgacagtcagtcattcgttatttttagagtctttttatgatatttttgagttcacaagcaagattaagcaacaagaaaagcaagaaaagaaacaaaa 34984659  T
Q  204 aactgaagaagctg-aaaaaggcatcgtgtcacgattactgaaaaacgtgacacgatt 260  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  34984658 aactg-agaagctgaaaaaaggcatcgtgtcacgattactgaaaaacgtgacacgatt 34984602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 122 - 252
Target Start/End: Original strand, 41976321 - 41976461
Alignment:
Q  122 tgatgacagtcaatcatttattatttttagagtctttttatgatatttttgaattcacaagcaagattaagcagcaaga--------aaaaactgaagaa 213  Q
    |||||||||||| |||||   |||||||||||| ||||||| |||||||||| ||||||||||||||||| ||||||||        |||||||||||||    
T  41976321 tgatgacagtcagtcattcgctatttttagagtgtttttataatatttttgagttcacaagcaagattaaacagcaagaaaagcaacaaaaactgaagaa 41976420  T
Q  214 gctgaaaaa--ggcatcgtgtcacgattactgaaaaacgtg 252  Q
     ||||||||  || |||||||||||||||||||||||||||    
T  41976421 actgaaaaaaggggatcgtgtcacgattactgaaaaacgtg 41976461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 120 - 203
Target Start/End: Original strand, 16243164 - 16243247
Alignment:
Q  120 cctgatgacagtcaatcatttattatttttagagtctttttatgatatttttgaattcacaagcaagattaagcagcaagaaaa 203  Q
    |||||||||| ||| |||||   ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  16243164 cctgatgacaatcagtcattcgctatttttagagtctttttatgatatttttgagttcacaagcaagattaagcagcaagaaaa 16243247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 142 - 239
Target Start/End: Original strand, 43808898 - 43809003
Alignment:
Q  142 ttatttttagagtctttttatgatatttttgaattcacaagcaagattaagcagcaag-------aaaaaactgaagaagct-gaaaaaggcatcgtgtc 233  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||       |||||| ||||||||||  ||||||||||||||||    
T  43808898 ttatttttagagtctttttatgatatttttgagttcacaagcaagattaagcagcaagaaaagcaaaaaaaatgaagaagctaaaaaaaggcatcgtgtc 43808997  T
Q  234 acgatt 239  Q
    ||||||    
T  43808998 acgatt 43809003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 115 - 203
Target Start/End: Original strand, 54460360 - 54460448
Alignment:
Q  115 tgtttcctgatgacagtcaatcatttattatttttagagtctttttatgatatttttgaattcacaagcaagattaagcagcaagaaaa 203  Q
    ||||| ||||||||||||| ||||| | ||||||||||||||||||||||||||||||| |||||||||||  ||||||| ||||||||    
T  54460360 tgtttactgatgacagtcagtcattcactatttttagagtctttttatgatatttttgagttcacaagcaatcttaagcaacaagaaaa 54460448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 122 - 261
Target Start/End: Complemental strand, 20729477 - 20729336
Alignment:
Q  122 tgatgacagtcaatcatttattatttttagagtcttttt-atgatatttttgaattcacaagcaagattaagcagcaagaaaaaactgaagaagctgaa- 219  Q
    |||||||||||| |||||   |||||||||||| ||||| ||||||||||| | |||||||||||| ||||||||||||||||| | |||||| |||||     
T  20729477 tgatgacagtcagtcattcgctatttttagagttttttttatgatattttttagttcacaagcaagcttaagcagcaagaaaaatc-gaagaaactgaag 20729379  T
Q  220 aaag-gcatcgtgtcacgattactgaaaaacgtgacacgatta 261  Q
    |||| | ||| ||||||||| ||||||||||||| ||||||||    
T  20729378 aaagtgaatcatgtcacgataactgaaaaacgtgtcacgatta 20729336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 244 - 301
Target Start/End: Complemental strand, 34984548 - 34984491
Alignment:
Q  244 aaaaacgtgacacgattatggaaaccttaatttgggtggtttgttacacaaggaagaa 301  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  34984548 aaaaacgtgacacgattatgaaaaccctaatttgggtggtttgttacacaaggaagaa 34984491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 244 - 301
Target Start/End: Original strand, 41976493 - 41976550
Alignment:
Q  244 aaaaacgtgacacgattatggaaaccttaatttgggtggtttgttacacaaggaagaa 301  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  41976493 aaaaacgtgacacgattatgaaaaccctaatttgggtggtttgttacacaaggaagaa 41976550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 130 - 203
Target Start/End: Complemental strand, 54736842 - 54736769
Alignment:
Q  130 gtcaatcatttattatttttagagtctttttatgatatttttgaattcacaagcaagattaagcagcaagaaaa 203  Q
    |||||||||| | |||||||||||||||||||||||| |||||| |||||||||||| ||||||| ||||||||    
T  54736842 gtcaatcattcactatttttagagtctttttatgatacttttgagttcacaagcaagcttaagcaacaagaaaa 54736769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 123 - 203
Target Start/End: Original strand, 9380012 - 9380092
Alignment:
Q  123 gatgacagtcaatcatttattatttttagagtctttttatgatatttttgaattcacaagcaagattaagcagcaagaaaa 203  Q
    ||||||||||| |||||   ||||||||||||||||||||||||||||||| |||||||||||| |||||||  |||||||    
T  9380012 gatgacagtcagtcattcgctatttttagagtctttttatgatatttttgagttcacaagcaagcttaagcaataagaaaa 9380092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 144 - 203
Target Start/End: Complemental strand, 16185634 - 16185575
Alignment:
Q  144 atttttagagtctttttatgatatttttgaattcacaagcaagattaagcagcaagaaaa 203  Q
    |||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||    
T  16185634 atttttagagtctttttatgatatttttgagttcacaaacaagcttaagcagcaagaaaa 16185575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 144 - 203
Target Start/End: Original strand, 35411699 - 35411758
Alignment:
Q  144 atttttagagtctttttatgatatttttgaattcacaagcaagattaagcagcaagaaaa 203  Q
    |||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||    
T  35411699 atttttagagtctttttatgatatttttgagttcacaagcaaacttaagcagcaagaaaa 35411758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 122 - 203
Target Start/End: Original strand, 3839790 - 3839874
Alignment:
Q  122 tgatgacagtcaatcatttattatttttagagtcttttt---atgatatttttgaattcacaagcaagattaagcagcaagaaaa 203  Q
    |||||||||||| ||||| | |||||||||||| |||||   ||||||||||||| |||||||||||| ||||||||||||||||    
T  3839790 tgatgacagtcagtcattcactatttttagagtttttttttaatgatatttttgagttcacaagcaagcttaagcagcaagaaaa 3839874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 122 - 199
Target Start/End: Complemental strand, 19305547 - 19305470
Alignment:
Q  122 tgatgacagtcaatcatttattatttttagagtctttttatgatatttttgaattcacaagcaagattaagcagcaag 199  Q
    |||||||| || |||||||  |||||||||||||||||||| |||||||||| |||||||||||| |||| |||||||    
T  19305547 tgatgacaatccatcatttcatatttttagagtctttttataatatttttgagttcacaagcaagcttaaacagcaag 19305470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 244 - 301
Target Start/End: Original strand, 31548753 - 31548810
Alignment:
Q  244 aaaaacgtgacacgattatggaaaccttaatttgggtggtttgttacacaaggaagaa 301  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||    
T  31548753 aaaaacgtgacacgattatggaaaccctaattttggtggtttgttacacaaggcagaa 31548810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 144 - 203
Target Start/End: Original strand, 31548573 - 31548632
Alignment:
Q  144 atttttagagtctttttatgatatttttgaattcacaagcaagattaagcagcaagaaaa 203  Q
    |||||||||||||||||||||||||||||| ||||||| |||| |||||||| |||||||    
T  31548573 atttttagagtctttttatgatatttttgagttcacaaccaagcttaagcagtaagaaaa 31548632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 198 - 260
Target Start/End: Complemental strand, 6445577 - 6445513
Alignment:
Q  198 agaaaaaactgaagaagctgaaaaa--ggcatcgtgtcacgattactgaaaaacgtgacacgatt 260  Q
    |||||||||||||||| |||||||   |||||||||||||||||||||||||||||| |||||||    
T  6445577 agaaaaaactgaagaaactgaaaagagggcatcgtgtcacgattactgaaaaacgtgtcacgatt 6445513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 122 - 191
Target Start/End: Complemental strand, 19302364 - 19302295
Alignment:
Q  122 tgatgacagtcaatcatttattatttttagagtctttttatgatatttttgaattcacaagcaagattaa 191  Q
    |||||| ||||  ||||||  ||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  19302364 tgatgatagtccgtcatttcatatttttagagtctttttatgatatttttgagttcacaagcaagcttaa 19302295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 295
Target Start/End: Original strand, 16243374 - 16243425
Alignment:
Q  244 aaaaacgtgacacgattatggaaaccttaatttgggtggtttgttacacaag 295  Q
    |||||| |||||||||||||||| || |||||||||||||||||||||||||    
T  16243374 aaaaacatgacacgattatggaacccctaatttgggtggtttgttacacaag 16243425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 247 - 301
Target Start/End: Complemental strand, 29344567 - 29344513
Alignment:
Q  247 aacgtgacacgattatggaaaccttaatttgggtggtttgttacacaaggaagaa 301  Q
    ||||||||| ||||||||||||| |||||| || |||||||||||||||||||||    
T  29344567 aacgtgacatgattatggaaaccctaattttggaggtttgttacacaaggaagaa 29344513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 198
Target Start/End: Original strand, 10884018 - 10884094
Alignment:
Q  122 tgatgacagtcaatcatttattatttttagagtcttttt-atgatatttttgaattcacaagcaagattaagcagcaa 198  Q
    |||||||||||| ||||| | |||||||||||||||||| |||||| |||||| |||||||||||| |||| ||||||    
T  10884018 tgatgacagtcagtcattcactatttttagagtctttttcatgata-ttttgagttcacaagcaagtttaaacagcaa 10884094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 198
Target Start/End: Complemental strand, 23299553 - 23299477
Alignment:
Q  122 tgatgacagtcaatcatttattatttttagagtcttttt-atgatatttttgaattcacaagcaagattaagcagcaa 198  Q
    |||||||||||| ||||| | |||||||||||||||||| |||||| |||||| |||||||||||| |||| ||||||    
T  23299553 tgatgacagtcagtcattcactatttttagagtctttttcatgata-ttttgagttcacaagcaagtttaaacagcaa 23299477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 244 - 296
Target Start/End: Complemental strand, 3293643 - 3293591
Alignment:
Q  244 aaaaacgtgacacgattatggaaaccttaatttgggtggtttgttacacaagg 296  Q
    |||||||||||||||||  ||||||| ||||||||||||||||||| ||||||    
T  3293643 aaaaacgtgacacgattcaggaaaccctaatttgggtggtttgttatacaagg 3293591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 244 - 295
Target Start/End: Original strand, 3840016 - 3840067
Alignment:
Q  244 aaaaacgtgacacgattatggaaaccttaatttgggtggtttgttacacaag 295  Q
    |||||||||||||||||||||||||| |||| | | ||||||||||||||||    
T  3840016 aaaaacgtgacacgattatggaaaccctaatgtagatggtttgttacacaag 3840067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 260
Target Start/End: Original strand, 54460460 - 54460525
Alignment:
Q  197 aagaaaaaactgaagaagctgaaaaa--ggcatcgtgtcacgattactgaaaaacgtgacacgatt 260  Q
    ||||||||||||||||| |||||||   |||||||||||||||||||| |||| |||| |||||||    
T  54460460 aagaaaaaactgaagaaactgaaaagtgggcatcgtgtcacgattactaaaaagcgtgtcacgatt 54460525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 122 - 198
Target Start/End: Original strand, 538015 - 538091
Alignment:
Q  122 tgatgacagtcaatcatttattatttttagagtcttttt-atgatatttttgaattcacaagcaagattaagcagcaa 198  Q
    |||||||||||| ||||| | |||||||||||||||||| |||||| |||||| ||||||| |||| |||| ||||||    
T  538015 tgatgacagtcagtcattcactatttttagagtctttttcatgata-ttttgagttcacaaacaagtttaaacagcaa 538091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 122 - 198
Target Start/End: Original strand, 6921890 - 6921966
Alignment:
Q  122 tgatgacagtcaatcatttattatttttagagtcttttt-atgatatttttgaattcacaagcaagattaagcagcaa 198  Q
    |||||||||||| ||||| | ||||||||||| |||||| |||||| |||||| |||||||||||| |||| ||||||    
T  6921890 tgatgacagtcagtcattcactatttttagagcctttttcatgata-ttttgagttcacaagcaagtttaaacagcaa 6921966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 244 - 301
Target Start/End: Original strand, 10880978 - 10881035
Alignment:
Q  244 aaaaacgtgacacgattatggaaaccttaatttgggtggtttgttacacaaggaagaa 301  Q
    |||||||||||||||||||||||||| ||||||  || |||||||| |||||| ||||    
T  10880978 aaaaacgtgacacgattatggaaaccctaatttcagttgtttgttaaacaaggcagaa 10881035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 260
Target Start/End: Original strand, 16243286 - 16243320
Alignment:
Q  226 atcgtgtcacgattactgaaaaacgtgacacgatt 260  Q
    ||||||||||||||||||||||||||| |||||||    
T  16243286 atcgtgtcacgattactgaaaaacgtgtcacgatt 16243320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 260
Target Start/End: Original strand, 28265112 - 28265149
Alignment:
Q  223 ggcatcgtgtcacgattactgaaaaacgtgacacgatt 260  Q
    |||||||||||||||||||||||||| ||| |||||||    
T  28265112 ggcatcgtgtcacgattactgaaaaatgtgtcacgatt 28265149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 260
Target Start/End: Original strand, 3839930 - 3839962
Alignment:
Q  228 cgtgtcacgattactgaaaaacgtgacacgatt 260  Q
    ||||||||||||||||||||||||| |||||||    
T  3839930 cgtgtcacgattactgaaaaacgtgtcacgatt 3839962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 49743825 - 49743785
Alignment:
Q  122 tgatgacagtcaatcatttattatttttagagtctttttat 162  Q
    |||||||||||| |||||  |||||||||||||||||||||    
T  49743825 tgatgacagtcagtcattagttatttttagagtctttttat 49743785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0520 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: scaffold0520
Description:

Target: scaffold0520; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 122 - 260
Target Start/End: Complemental strand, 4880 - 4723
Alignment:
Q  122 tgatgacagtcaatcatttattatttttagagtctttttatgatatttttgaattcacaagcaagattaagcagcaa------------------gaaaa 203  Q
    |||||||||||| |||||  |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||                  |||||    
T  4880 tgatgacagtcagtcattcgttatttttagagtctttttatgatatttttgagttcacaaacaagattaagcagcaaaaaaagaaagaaaagcaagaaaa 4781  T
Q  204 aactgaagaagctgaaaaa-ggcatcgtgtcacgattactgaaaaacgtgacacgatt 260  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  4780 aactgaagaagctgaaaaaaggcatcgtgtcacgattactgaaaaacgtgacacgatt 4723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0520; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 245 - 301
Target Start/End: Complemental strand, 4687 - 4631
Alignment:
Q  245 aaaacgtgacacgattatggaaaccttaatttgggtggtttgttacacaaggaagaa 301  Q
    |||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  4687 aaaatgtgacacgattatagaaaccctaatttgggtggtttgttacacaaggaagaa 4631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 121 - 262
Target Start/End: Complemental strand, 28666177 - 28666044
Alignment:
Q  121 ctgatgacagtcaatcatttattatttttagagtctttttatgatatttttgaattcacaagcaagattaagcagcaagaaaaaactgaagaagctgaaa 220  Q
    ||||||||||||| |||||  |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||       ||    
T  28666177 ctgatgacagtcagtcattcgttatttttagagtctttttatgatatttttgagttcacaagcaagcttaagcagcaaga-aaaactgaag-------aa 28666086  T
Q  221 aaggcatcgtgtcacgattactgaaaaacgtgacacgattat 262  Q
    | || ||| ||||||||| ||||||||||||| |||||||||    
T  28666085 agggaatcatgtcacgataactgaaaaacgtgtcacgattat 28666044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 120 - 260
Target Start/End: Original strand, 10289184 - 10289334
Alignment:
Q  120 cctgatgacagtcaatcatttattatttttagagtctttttatgatatttttgaattcacaagcaagattaagcagcaaga--------aaaaactgaag 211  Q
    |||||||||||| | |||||   ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||        |||||| ||||    
T  10289184 cctgatgacagtaagtcattcgctatttttagagtctttttatgatatttttgagttcacaagcaagattaagcaacaagaaaagcaagaaaaaccgaag 10289283  T
Q  212 aagctgaaaaa--ggcatcgtgtcacgattactgaaaaacgtgacacgatt 260  Q
    || ||||||||  || ||||||||| |||||||||||||||||||||||||    
T  10289284 aaactgaaaaaaggggatcgtgtcaagattactgaaaaacgtgacacgatt 10289334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 121 - 203
Target Start/End: Original strand, 9953035 - 9953117
Alignment:
Q  121 ctgatgacagtcaatcatttattatttttagagtctttttatgatatttttgaattcacaagcaagattaagcagcaagaaaa 203  Q
    ||||||||||||  ||||||   |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  9953035 ctgatgacagtctgtcatttcacatttttagagtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaa 9953117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 244 - 301
Target Start/End: Original strand, 10289388 - 10289445
Alignment:
Q  244 aaaaacgtgacacgattatggaaaccttaatttgggtggtttgttacacaaggaagaa 301  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  10289388 aaaaacgtgacacgattatggaaaccctaattttggtggtttgttacacaaggaagaa 10289445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 244 - 295
Target Start/End: Complemental strand, 28665971 - 28665920
Alignment:
Q  244 aaaaacgtgacacgattatggaaaccttaatttgggtggtttgttacacaag 295  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  28665971 aaaaacgtgacacgattatggaaaccctaatttaggtggtttgttacacaag 28665920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 203
Target Start/End: Original strand, 13004434 - 13004481
Alignment:
Q  156 tttttatgatatttttgaattcacaagcaagattaagcagcaagaaaa 203  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||    
T  13004434 tttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaa 13004481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 244 - 296
Target Start/End: Complemental strand, 22561834 - 22561782
Alignment:
Q  244 aaaaacgtgacacgattatggaaaccttaatttgggtggtttgttacacaagg 296  Q
    ||||||||| ||| ||| |||||||| ||||||||||||||||||||||||||    
T  22561834 aaaaacgtggcacaattttggaaaccctaatttgggtggtttgttacacaagg 22561782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 143 - 192
Target Start/End: Original strand, 20181294 - 20181343
Alignment:
Q  143 tatttttagagtctttttatgatatttttgaattcacaagcaagattaag 192  Q
    ||||||||||||| |||| |||||||||||| |||||||||||| |||||    
T  20181294 tatttttagagtccttttgtgatatttttgagttcacaagcaagcttaag 20181343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 143 - 192
Target Start/End: Complemental strand, 22154697 - 22154648
Alignment:
Q  143 tatttttagagtctttttatgatatttttgaattcacaagcaagattaag 192  Q
    ||||||||||||| |||| |||||||||||| |||||||||||| |||||    
T  22154697 tatttttagagtccttttgtgatatttttgagttcacaagcaagcttaag 22154648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 159
Target Start/End: Complemental strand, 12987075 - 12987037
Alignment:
Q  121 ctgatgacagtcaatcatttattatttttagagtctttt 159  Q
    ||||||||||||||||||| ||||||||||| |||||||    
T  12987075 ctgatgacagtcaatcattcattatttttagggtctttt 12987037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 122 - 260
Target Start/End: Original strand, 12582218 - 12582366
Alignment:
Q  122 tgatgacagtcaatcatttattatttttagagtctttttatgatatttttgaattcacaagcaagattaagcagcaaga--------aaaaactgaagaa 213  Q
    |||||| | |||||||||   ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||        |||||||||||||    
T  12582218 tgatgaaaatcaatcattcgctatttttagagtctttttatgatatttttgagttcacaagcaagattaagcagaaagaaaagcaagaaaaactgaagaa 12582317  T
Q  214 gctgaaaaa--ggcatcgtgtcacgattactgaaaaacgtgacacgatt 260  Q
     ||||||||  || ||||||||||||||| ||||||||||| |||||||    
T  12582318 actgaaaaaaggggatcgtgtcacgattattgaaaaacgtgtcacgatt 12582366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 122 - 252
Target Start/End: Complemental strand, 5981220 - 5981083
Alignment:
Q  122 tgatgacagtcaatcatttattatttttagagtctttttatgatatttttgaattcacaagcaagattaagcagcaaga-----aaaaactgaagaagct 216  Q
    |||||||||||  ||||||   |||||||||||||||||||||||||||||| |||||||||||| ||||| || || |     ||||||||||||| ||    
T  5981220 tgatgacagtccgtcatttcacatttttagagtctttttatgatatttttgagttcacaagcaagtttaagtaggaaaagcaagaaaaactgaagaaact 5981121  T
Q  217 gaaaaa--ggcatcgtgtcacgattactgaaaaacgtg 252  Q
     |||||  || |||||||||| ||||||||||||||||    
T  5981120 aaaaaaagggaatcgtgtcacaattactgaaaaacgtg 5981083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 121 - 203
Target Start/End: Complemental strand, 45156919 - 45156837
Alignment:
Q  121 ctgatgacagtcaatcatttattatttttagagtctttttatgatatttttgaattcacaagcaagattaagcagcaagaaaa 203  Q
    |||||||||||  ||||||   ||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||    
T  45156919 ctgatgacagtttatcattctatatttttagagtctttttatgatatttttgagttcacaagcaagctttagcagcaagaaaa 45156837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 244 - 295
Target Start/End: Original strand, 12582420 - 12582471
Alignment:
Q  244 aaaaacgtgacacgattatggaaaccttaatttgggtggtttgttacacaag 295  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  12582420 aaaaacgtgacacgattatggaaaccctaatttgggtggtttgttacacaag 12582471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 244 - 301
Target Start/End: Complemental strand, 5981021 - 5980964
Alignment:
Q  244 aaaaacgtgacacgattatggaaaccttaatttgggtggtttgttacacaaggaagaa 301  Q
    |||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||    
T  5981021 aaaaacatgacacgattatggaaaccctaatttgggtggtttgtttcacaaggaagaa 5980964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 5540973 - 5540917
Alignment:
Q  144 atttttagagtctttttatgatatttttgaattcacaagcaagattaagcagcaaga 200  Q
    |||||||||||||||||||||||||||||| ||||||||||||  ||||||||||||    
T  5540973 atttttagagtctttttatgatatttttgagttcacaagcaagcataagcagcaaga 5540917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 144 - 203
Target Start/End: Original strand, 14420886 - 14420945
Alignment:
Q  144 atttttagagtctttttatgatatttttgaattcacaagcaagattaagcagcaagaaaa 203  Q
    |||||||||||||||||||||||||||| | |||||||||||| ||||||| ||||||||    
T  14420886 atttttagagtctttttatgatattttttagttcacaagcaagcttaagcaacaagaaaa 14420945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 122 - 185
Target Start/End: Complemental strand, 18826834 - 18826771
Alignment:
Q  122 tgatgacagtcaatcatttattatttttagagtctttttatgatatttttgaattcacaagcaa 185  Q
    |||||||||||| ||||||  |||||||||||||||||||||||| |||||| |||||||||||    
T  18826834 tgatgacagtcagtcatttgctatttttagagtctttttatgataattttgagttcacaagcaa 18826771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 122 - 202
Target Start/End: Original strand, 30640505 - 30640587
Alignment:
Q  122 tgatgacagtcaatcatttattatttttagagtctttt--tatgatatttttgaattcacaagcaagattaagcagcaagaaa 202  Q
    |||||||||||||||||| | |||||| ||| ||||||  ||||||| |||||| |||||||||||| |||||||||||||||    
T  30640505 tgatgacagtcaatcattcactattttaagaatctttttttatgatacttttgagttcacaagcaagcttaagcagcaagaaa 30640587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 198 - 260
Target Start/End: Complemental strand, 17895433 - 17895369
Alignment:
Q  198 agaaaaaactgaagaagctgaaaaa--ggcatcgtgtcacgattactgaaaaacgtgacacgatt 260  Q
    |||||||||||||||| |||||||   |||||||||||||||||||||||||||||| |||||||    
T  17895433 agaaaaaactgaagaaactgaaaagagggcatcgtgtcacgattactgaaaaacgtgtcacgatt 17895369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 121 - 203
Target Start/End: Original strand, 19792925 - 19793009
Alignment:
Q  121 ctgatgacagtcaatcatttattatttttagagtctttt-tatgatatttttgaattcacaagc-aagattaagcagcaagaaaa 203  Q
    ||||||||||||   |||| | ||||||||||||||||| |||||||||||||| ||||||||| |||||||| || ||||||||    
T  19792925 ctgatgacagtcggccattcactatttttagagtcttttttatgatatttttgagttcacaagcaaagattaaacaacaagaaaa 19793009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 204
Target Start/End: Original strand, 25228039 - 25228096
Alignment:
Q  146 ttttagagtctttttatgatatttttgaattcacaagcaagattaagcagcaagaaaaa 204  Q
    |||||||||||||| ||||||||||||| |||||||||||| | ||| |||||||||||    
T  25228039 ttttagagtctttt-atgatatttttgagttcacaagcaagctcaagaagcaagaaaaa 25228096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 186
Target Start/End: Original strand, 10663011 - 10663075
Alignment:
Q  122 tgatgacagtcaatcatttattatttttagagtcttttt-atgatatttttgaattcacaagcaag 186  Q
    |||||||||||| ||||| | |||||||||||||||||| |||||| | |||| ||||||||||||    
T  10663011 tgatgacagtcagtcattcactatttttagagtctttttcatgata-tgttgagttcacaagcaag 10663075  T

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Target: scaffold0757 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: scaffold0757
Description:

Target: scaffold0757; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 122 - 260
Target Start/End: Original strand, 4563 - 4713
Alignment:
Q  122 tgatgacagtcaatcatttattatttttagagtctttttatgatatttttgaattcacaagcaagattaagcag---------caagaaaaaactgaaga 212  Q
    |||||||||||| ||||| | ||||||||||||||||||||||||||||||| |||||||||||| ||||||||         |||||||||||||||||    
T  4563 tgatgacagtcagtcattcactatttttagagtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaatcaagaaaaaactgaaga 4662  T
Q  213 agctgaaaaa--ggcatcgtgtcacgattactg-aaaaacgtgacacgatt 260  Q
    | || |||||  |||||||||||||||||| || ||||||||| |||||||    
T  4663 aacttaaaaaagggcatcgtgtcacgattattgaaaaaacgtgtcacgatt 4713  T

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Target: scaffold0757; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 244 - 295
Target Start/End: Original strand, 4767 - 4818
Alignment:
Q  244 aaaaacgtgacacgattatggaaaccttaatttgggtggtttgttacacaag 295  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  4767 aaaaacgtgacacgattatggaaaccctaatttgggtggtttattacacaag 4818  T

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Target: scaffold0270 (Bit Score: 59; Significance: 5e-25; HSPs: 3)
Name: scaffold0270
Description:

Target: scaffold0270; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 122 - 260
Target Start/End: Complemental strand, 1060 - 911
Alignment:
Q  122 tgatgacagtcaatcatttattatttttagagtctttttatgatatttttgaattcacaagcaagattaagcagcaag---------aaaaaactgaaga 212  Q
    |||||||||||| |||||   || ||||||||| |||||||||||||||||| |||||||||||| ||||||||||||         |||||||||||||    
T  1060 tgatgacagtcagtcattcgctacttttagagtatttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaagcaagaaaaaactgaaga 961  T
Q  213 agctgaaa--aaggcatcgtgtcacgattactgaaaaacgtgacacgatt 260  Q
    | ||||||  | |||||||||||||||||||||||||| ||| |||||||    
T  960 aactgaaaagagggcatcgtgtcacgattactgaaaaatgtgtcacgatt 911  T

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Target: scaffold0270; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 146 - 203
Target Start/End: Complemental strand, 4396 - 4339
Alignment:
Q  146 ttttagagtctttttatgatatttttgaattcacaagcaagattaagcagcaagaaaa 203  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  4396 ttttagagtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaa 4339  T

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Target: scaffold0270; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 146 - 203
Target Start/End: Complemental strand, 11526 - 11469
Alignment:
Q  146 ttttagagtctttttatgatatttttgaattcacaagcaagattaagcagcaagaaaa 203  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  11526 ttttagagtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaa 11469  T

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Target: scaffold0005 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 144 - 203
Target Start/End: Complemental strand, 246328 - 246269
Alignment:
Q  144 atttttagagtctttttatgatatttttgaattcacaagcaagattaagcagcaagaaaa 203  Q
    |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  246328 atttttagagtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaa 246269  T

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Target: scaffold0015 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 144 - 203
Target Start/End: Original strand, 197264 - 197323
Alignment:
Q  144 atttttagagtctttttatgatatttttgaattcacaagcaagattaagcagcaagaaaa 203  Q
    |||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||    
T  197264 atttttagagtctttttatgatatttttgagttcacaagcaagcataagcagcaagaaaa 197323  T

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Target: scaffold0381 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 122 - 203
Target Start/End: Complemental strand, 6554 - 6472
Alignment:
Q  122 tgatgacagtcaatcatttattatttttagagtcttttt-atgatatttttgaattcacaagcaagattaagcagcaagaaaa 203  Q
    |||||||||||| |||||   |||||||||||||||||| ||||||||||||| |||||| ||||| ||||||| ||||||||    
T  6554 tgatgacagtcagtcattcgctatttttagagtcttttttatgatatttttgagttcacaggcaagcttaagcaacaagaaaa 6472  T

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Target: scaffold1993 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold1993
Description:

Target: scaffold1993; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 122 - 203
Target Start/End: Original strand, 1045 - 1126
Alignment:
Q  122 tgatgacagtcaatcatttattatttttagagtctttttatgatatttttgaattcacaagcaagattaagcagcaagaaaa 203  Q
    |||||||||||| ||||||   ||||||||||||||||||||||||||| || |||| ||| ||| ||||||| ||||||||    
T  1045 tgatgacagtcagtcatttcacatttttagagtctttttatgatattttggagttcataaggaagcttaagcaccaagaaaa 1126  T

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Target: scaffold0080 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0080
Description:

Target: scaffold0080; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 145 - 204
Target Start/End: Original strand, 26277 - 26336
Alignment:
Q  145 tttttagagtctttttatgatatttttgaattcacaagcaagattaagcagcaagaaaaa 204  Q
    ||||||||||||||||||||||||||||| |||||||||||   ||||||||| ||||||    
T  26277 tttttagagtctttttatgatatttttgagttcacaagcaaacataagcagcatgaaaaa 26336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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