View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11262_low_11 (Length: 253)
Name: NF11262_low_11
Description: NF11262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11262_low_11 |
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| [»] scaffold0286 (1 HSPs) |
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Alignment Details
Target: scaffold0286 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 12809 - 13048
Alignment:
| Q |
1 |
ctgcaagagatgaaactcgaatctgtactaggcgaagcacttttaatagctgaatggatccatgcagagattacgtttaagtgtgagggttgcatagagg |
100 |
Q |
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| T |
12809 |
ctgcaagagatgaaactcgaatctgtactaggcgaagcacttttaatagctgaatggatccatgcagagattacgtttaagtgtgagggttgcatagagg |
12908 |
T |
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| Q |
101 |
aagcattggttatagaaagtggaattcacgtattcaagctgaaaagtagtatggaggatattcgattcaccaatccgtatgaatgagaaaattagatgaa |
200 |
Q |
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| T |
12909 |
aagcattggttatagaaagtggaattcacgtattcaagctgaaaagtagtatggaggatattcgattcaccaatccgtatgaatgagaaaattagatgaa |
13008 |
T |
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| Q |
201 |
gactcaatagttcgctatcacaattccacccgcatctgtg |
240 |
Q |
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| T |
13009 |
gactcaatagttctctatcacaattccacccgcatctgtg |
13048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 2170452 - 2170213
Alignment:
| Q |
1 |
ctgcaagagatgaaactcgaatctgtactaggcgaagcacttttaatagctgaatggatccatgcagagattacgtttaagtgtgagggttgcatagagg |
100 |
Q |
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| T |
2170452 |
ctgcaagagatgaaactcgaatctgtactaggcgaagcacttttaatagctgaatggatccatgcagagattacgtttaagtgtgagggttgcatagagg |
2170353 |
T |
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| Q |
101 |
aagcattggttatagaaagtggaattcacgtattcaagctgaaaagtagtatggaggatattcgattcaccaatccgtatgaatgagaaaattagatgaa |
200 |
Q |
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| T |
2170352 |
aagcattggttatagaaagtggaattcacgtattcaagctgaaaagtagtatggaggatattcgattcaccaatccgtatgaatgagaaaattagatgaa |
2170253 |
T |
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| Q |
201 |
gactcaatagttcgctatcacaattccacccgcatctgtg |
240 |
Q |
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| T |
2170252 |
gactcaatagttctctatcacaattccacccgcatctgtg |
2170213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 42 - 190
Target Start/End: Original strand, 2188209 - 2188357
Alignment:
| Q |
42 |
tttaatagctgaatggatccatgcagagattacgtttaagtgtgagggttgcatagaggaagcattggttatagaaagtggaattcacgtattcaagctg |
141 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||| |||||||||||||| ||||||||||||||||| |
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| T |
2188209 |
tttaatagatgaatggatccatgcagagattacgtttaagtgtgagggcggcagagaggaagaattgtttatagaaagtggagttcacgtattcaagctg |
2188308 |
T |
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| Q |
142 |
aaaagtagtatggaggatattcgattcaccaatccgtatgaatgagaaa |
190 |
Q |
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|||| ||||||||||||||||||||| ||||||||| || | ||||||| |
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| T |
2188309 |
aaaactagtatggaggatattcgatttaccaatccgcataattgagaaa |
2188357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 110 - 161
Target Start/End: Original strand, 16694585 - 16694636
Alignment:
| Q |
110 |
ttatagaaagtggaattcacgtattcaagctgaaaagtagtatggaggatat |
161 |
Q |
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| T |
16694585 |
ttatagaaagtggaattcacttattcaagcagaaaagtagcatggaggatat |
16694636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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