View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11262_low_13 (Length: 245)
Name: NF11262_low_13
Description: NF11262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11262_low_13 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 11974593 - 11974362
Alignment:
| Q |
1 |
cattttctgcactaattctgtgtttgttcgatcaatattccaaattcttgaaatatgtatttggttttgctacttgttaaagtttgtt--attttatagc |
98 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
11974593 |
cattctctgcactaattctgtgttagttcgatcaatattccaaattcttgaaatatgtatttggttttgctacttgttaaattttgtttcattttatagc |
11974494 |
T |
|
| Q |
99 |
aaacaaacataagttgccaatttaccaaaaacaataaaaaacataagttgccattaaatcaacttgataggtatttttcttttatcaatagcttatatcc |
198 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11974493 |
aaacaaacataagttgccaatttacccaaaaaaataaaaaacataagttgccattaaatcaacttgataggtatttttcttttatcaatagcttatatcc |
11974394 |
T |
|
| Q |
199 |
agttatagaagaatcataaaacatgcaaaatt |
230 |
Q |
| |
|
||||||||||||||| |||||||||||||| |
|
|
| T |
11974393 |
agttatagaagaatcgataaacatgcaaaatt |
11974362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University