View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11262_low_14 (Length: 243)
Name: NF11262_low_14
Description: NF11262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11262_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 2490024 - 2489783
Alignment:
| Q |
1 |
cgtctactaattgcttcatccaagtcaaagggcctattggttgcagcgaggacaagaatacgatcctctgatttcgaggtaagtccatcccaattggaca |
100 |
Q |
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| T |
2490024 |
cgtctaataattgcttcatccaagtcaaagggcctattggttgcagcgaggacaagaatacgatcctctgatttcgaggtaagtccatcccaattggaca |
2489925 |
T |
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| Q |
101 |
tgaattcattctttattttccgcatggcttcatgttccccaactcttgttcgctgcccaagcatactgtcaacctcatcgacaaatataatagttgggga |
200 |
Q |
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| T |
2489924 |
tgaattcattctttattttccgcatggcttcatgttccccaactcttgttcgctgcccaagcatactgtcaacctcatcgacaaatataatagttgggga |
2489825 |
T |
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| Q |
201 |
gaccttggctgccagtgtgaataaagctcggacattcttctc |
242 |
Q |
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| T |
2489824 |
gaccttggctgccagtgtgaataaagctcggacattcttctc |
2489783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 8 - 242
Target Start/End: Original strand, 41590969 - 41591203
Alignment:
| Q |
8 |
taattgcttcatccaagtcaaagggcctattggttgcagcgaggacaagaatacgatcctctgatttcgaggtaagtccatcccaattggacatgaattc |
107 |
Q |
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| T |
41590969 |
taatagcttcatccaagtcaaatggcctattggttgctgcaagaacaaggatgcgctctccttgttttgtcgtgagcccgtcccaatgggacataaattc |
41591068 |
T |
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| Q |
108 |
attctttattttccgcatggcttcatgttccccaactcttgttcgctgcccaagcatactgtcaacctcatcgacaaatataatagttggggagaccttg |
207 |
Q |
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| T |
41591069 |
attctttattttccgcatggcttcatgctccccaactcttgttcgttgcccaagcatgctatcaacctcatcgacaaatataatagttggggagactttg |
41591168 |
T |
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| Q |
208 |
gctgccagtgtgaataaagctcggacattcttctc |
242 |
Q |
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| T |
41591169 |
gatgcaagtgtgaataaagcgcgaacattcttctc |
41591203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 82 - 239
Target Start/End: Original strand, 11094442 - 11094599
Alignment:
| Q |
82 |
agtccatcccaattggacatgaattcattctttattttccgcatggcttcatgttccccaactcttgttcgctgcccaagcatactgtcaacctcatcga |
181 |
Q |
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||||||||||||| | |||||||||||| || || |||| |||||| |||||||| || ||||| || ||||| || ||||| |||||||| ||||||| |
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| T |
11094442 |
agtccatcccaatgtgtcatgaattcatttttaatcttcctcatggcctcatgttctccgactctagtacgctgaccgagcatgctgtcaacttcatcga |
11094541 |
T |
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| Q |
182 |
caaatataatagttggggagaccttggctgccagtgtgaataaagctcggacattctt |
239 |
Q |
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| T |
11094542 |
cgaatataatagtcggagcaaccttagctgctagcgtgaacaaagctcggacattctt |
11094599 |
T |
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