View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11262_low_15 (Length: 224)
Name: NF11262_low_15
Description: NF11262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11262_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 157; Significance: 1e-83; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 33 - 205
Target Start/End: Original strand, 6250842 - 6251014
Alignment:
| Q |
33 |
gaggagaagtaaaggaagaaaaatgtaaaatttcgagggcttttcatatgaaaagcaatctattagaaaaggtaagtaagtaatatgaaatgcaatctat |
132 |
Q |
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| T |
6250842 |
gaggtgaagcaaaggaagaaaaatgtaaaatttcgagggcttttcatatgaaaagcaatctattagaaaaggtaagtaagtaatatgaaatgcaatctat |
6250941 |
T |
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| Q |
133 |
agcaggaaaaaatgatgaacagttagcatagataggaaatgacctggacatgtttcaagtttcaactaagtga |
205 |
Q |
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| T |
6250942 |
agcaggaaaaaatgatgaacagttagcatagataggaaatgacctgggcgtgtttcaagtttcaactaagtga |
6251014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 38 - 205
Target Start/End: Original strand, 6171504 - 6171673
Alignment:
| Q |
38 |
gaagtaaaggaagaaaaatgtaaaatttcgagggcttttc-atatgaaaagcaatctattagaaaaggtaagtaagtaatatgaaatgcaatctatagca |
136 |
Q |
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| T |
6171504 |
gaagcaaaggaagaaaaatgtaaaatttcgggtgcttttccatatgaaaagcaatctattagaaaaggtaagtaagtaatatgaaatgcaatctatagca |
6171603 |
T |
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| Q |
137 |
gg-aaaaaatgatgaacagttagcatagataggaaatgacctggacatgtttcaagtttcaactaagtga |
205 |
Q |
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| T |
6171604 |
ggaaaaaaatgatgaacagttagcatagataggaaatgacttgggcgtgtttcaagtttcaactaagtga |
6171673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 114 - 205
Target Start/End: Original strand, 6240698 - 6240790
Alignment:
| Q |
114 |
aatatgaaatgcaatctatagcaggaaaaaatgatgaacagttagcatagataggaaatgacctggacatgtttcaagtt-tcaactaagtga |
205 |
Q |
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| T |
6240698 |
aatatgaaatgcaatctatagcaggaaaaaataatgaacatttagcatagagaggaaatgacctaggcgtgtttcaagttatcaactaagtga |
6240790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 109
Target Start/End: Original strand, 6239853 - 6239925
Alignment:
| Q |
38 |
gaagtaaaggaagaaaaatgtaaaatttcgagggc-ttttcatatgaaaagcaatctattagaaaaggtaagt |
109 |
Q |
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|||| ||||||||||||||||||||||||| | | |||| |||||| |||||||||| ||||| | |||||| |
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| T |
6239853 |
gaaggaaaggaagaaaaatgtaaaatttcgggttcttttttatatgagaagcaatctaatagaacaagtaagt |
6239925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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