View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11262_low_3 (Length: 375)
Name: NF11262_low_3
Description: NF11262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11262_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 10 - 360
Target Start/End: Complemental strand, 52761154 - 52760804
Alignment:
| Q |
10 |
cagagagagcttgaagttcaacaaccatctgttgaagggtctattgactgtccattattaatggaacaagtataccctacaactttgtagtttatattca |
109 |
Q |
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| T |
52761154 |
cagagagagcttgaagttcaacaaccatctgttgaagggtctattgactgtccattattaatggaacaagtataccctacaactttgtagtttatattca |
52761055 |
T |
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| Q |
110 |
taatgtcatttgttgatgatgcttagaaattttatgacttgtaggagacgacagcatatccagtaaagcagataaaattggggtttataaccggtcttgt |
209 |
Q |
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| T |
52761054 |
taatgtcatttattgatgatgcttagaaattttatgacttgtaggagacgacagcatatccagtaaagcagataaaattggggtttataaccggtcttgt |
52760955 |
T |
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| Q |
210 |
tactagggaaaaatcaattcctttcgaaagaattctatttcgtgctactagaggaaatgtttttctgaagcaggctgtggttgaacatcatgttctagat |
309 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52760954 |
tactagggaaaaatcaattccttttgaaagaattctatttcgtgctactagaggaaatgtttttctgaagcaggctgtggttgaacatcatgttctagat |
52760855 |
T |
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| Q |
310 |
cctttgtcgggagagaaggttactcattctaaagtctctaattaattactt |
360 |
Q |
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| T |
52760854 |
cctttgtcgggagagaaggttactcattctaaagtctctaattaattactt |
52760804 |
T |
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