View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11262_low_4 (Length: 344)
Name: NF11262_low_4
Description: NF11262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11262_low_4 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 169 - 344
Target Start/End: Original strand, 47571746 - 47571921
Alignment:
| Q |
169 |
tttcatttatagtaagaggatgtggacaccctaaattttgtcctcaaccaaaagtagccaagattgtttaataattttcacatgattatacctagtgggt |
268 |
Q |
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| T |
47571746 |
tttcatttatagtaagaggatgtggacaccctaaattttgtcctcaaccaaaagtagccaagattgtttaataattttcacatggttatacctagtgggt |
47571845 |
T |
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| Q |
269 |
ggggctactataatcattaaactacatgaagcttaaaaaagaaaacatatatataagccagtaccaacatttgagc |
344 |
Q |
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| T |
47571846 |
ggggctactataatcattaaactacatgaagcttaaaaaagaaaacatatatataagccagtaccaacatttgagc |
47571921 |
T |
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Target: chr1; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 18 - 177
Target Start/End: Original strand, 47571403 - 47571562
Alignment:
| Q |
18 |
catcaatggatcgacagtgagtcaattttaccctcagcaattgaatagtttcagataagaaaatgaataagaatattttcaactagtttatgaaataaat |
117 |
Q |
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| T |
47571403 |
catcaatggatcgacagtgagtcaattttaccctcagcaattgaatattttcagataagaaaatgaataagaatattttcaattagtttatgaaataaat |
47571502 |
T |
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| Q |
118 |
ccatattttcacacacctaagataaaatgccgacaactatcctcaactagttttcattta |
177 |
Q |
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| T |
47571503 |
ccatattttcacacacctaagataaaatgccgacaactatcctcaactagttttcattta |
47571562 |
T |
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