View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11262_low_5 (Length: 324)
Name: NF11262_low_5
Description: NF11262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11262_low_5 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 18 - 324
Target Start/End: Complemental strand, 17169224 - 17168916
Alignment:
| Q |
18 |
taaagaaggatggaatggattgtcttggatggcatttagagaattatgggaatttaccaaacttagttttggttcatctgtaatgatctgtttagaacaa |
117 |
Q |
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| T |
17169224 |
taaagaaggatggaatggattgtcttggatggcatttagagaattatgggaatttaccaaacttagtcttggttcatctgtaatgatctgtttagaacaa |
17169125 |
T |
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| Q |
118 |
tggtatactgcttgcattatacttcttgctgggcatcttgataatcctgtgattgctgttggttccttttcgatttggtaagaataagatgataagctac |
217 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17169124 |
tggtatactgcttgcattatacttcttgctggtcatcttgataatcctgtgattgctgttggttccttttcgatttggtaagaataagatgataagctac |
17169025 |
T |
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| Q |
218 |
gaatcacatactcctcggattaggtgtgtcctggtgtcgaatacttatcgtgtttgatacagacaccaatacgacacaaacac--atagttacattgaat |
315 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
17169024 |
gaaacacatactcctcggattaggtgtgtcctggtgtcgaatacttatcatgtttgatacagacaccaatacgacacaaacacatatagttacattgaat |
17168925 |
T |
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| Q |
316 |
tatgtcatt |
324 |
Q |
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||||||||| |
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| T |
17168924 |
tatgtcatt |
17168916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 17150672 - 17150489
Alignment:
| Q |
18 |
taaagaaggatggaatggattgtcttggatggcatttagagaattatgggaatttaccaaacttagttttggttcatctgtaatgatctgtttagaacaa |
117 |
Q |
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| T |
17150672 |
taaagaaggatggaatggattgtcttggatggcatttagagaattatgggaatttactaagctaagttttggttcatctgtaatgatttgtttagaacag |
17150573 |
T |
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| Q |
118 |
tggtatactgcttgcattatacttcttgctgggcatcttgataatcctgtgattgctgttggttccttttcgatttggtaagaa |
201 |
Q |
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| T |
17150572 |
tggtatactacaatcattatccttcttgctggctatcttgataatcctgtgattgctcttggttcatattcaatttggtaagaa |
17150489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 19 - 199
Target Start/End: Complemental strand, 17137370 - 17137190
Alignment:
| Q |
19 |
aaagaaggatggaatggattgtcttggatggcatttagagaattatgggaatttaccaaacttagttttggttcatctgtaatgatctgtttagaacaat |
118 |
Q |
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|||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||| | ||| ||| |||||||||||| |||||| ||||||||||| | |
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| T |
17137370 |
aaagaaggatggaatggattatcttggatggcatttagggaactatgggaatttacaatactaagtcttggttcatctggaatgatttgtttagaacagt |
17137271 |
T |
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| Q |
119 |
ggtatactgcttgcattatacttcttgctgggcatcttgataatcctgtgattgctgttggttccttttcgatttggtaag |
199 |
Q |
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| T |
17137270 |
ggtatagtgtttgcattatccttcttgctggtcaccttgataatcctgtgattgctcttggttcctattcaatttggtaag |
17137190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 256
Target Start/End: Original strand, 3947716 - 3947745
Alignment:
| Q |
227 |
actcctcggattaggtgtgtcctggtgtcg |
256 |
Q |
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| T |
3947716 |
actcctcggattaggtgtgtcctggtgtcg |
3947745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 267
Target Start/End: Original strand, 38134350 - 38134390
Alignment:
| Q |
227 |
actcctcggattaggtgtgtcctggtgtcgaatacttatcg |
267 |
Q |
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| T |
38134350 |
actcctcggattaggcgtgtcccgatgtcgaatacttatcg |
38134390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 255
Target Start/End: Complemental strand, 26312873 - 26312845
Alignment:
| Q |
227 |
actcctcggattaggtgtgtcctggtgtc |
255 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
26312873 |
actcctcggattaggtgtgtcctggtgtc |
26312845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 255
Target Start/End: Original strand, 7918169 - 7918197
Alignment:
| Q |
227 |
actcctcggattaggtgtgtcctggtgtc |
255 |
Q |
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| T |
7918169 |
actcctcggattaggtgtgtcctggtgtc |
7918197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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