View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11262_low_7 (Length: 276)
Name: NF11262_low_7
Description: NF11262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11262_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 116; Significance: 5e-59; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 11 - 149
Target Start/End: Original strand, 11974572 - 11974708
Alignment:
| Q |
11 |
cacagaattagtgcagaaaatgataaaataactatatgatagttgcaagaattagaaattattagaagattaatcaaataatgactaacaaggacaagta |
110 |
Q |
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| T |
11974572 |
cacagaattagtgcagagaatgataaaataactat--gatagttgcaagaattagaaattattaatagattaatcaaataatgactaacaaggacaagta |
11974669 |
T |
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| Q |
111 |
tgaaacatgcatgtagaacaacaaaacaaacaatgaata |
149 |
Q |
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| T |
11974670 |
tgaaacatgcatgtagaacaacaaaacaaacaatgaata |
11974708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 147 - 259
Target Start/End: Original strand, 11974777 - 11974889
Alignment:
| Q |
147 |
atatcatctaaacaagatcagactcctcacatttctactgcgctatttaactcaaaatacacagttaaaatatgagccgtctaatatctaatatcttatc |
246 |
Q |
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||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11974777 |
atatcatctaaacaagatcagacgactcacatttctactgcgtcatttaactcaaaatacacagttaaaatatgagccgtctaatatctaatatcttatc |
11974876 |
T |
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| Q |
247 |
agatggtttatat |
259 |
Q |
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| T |
11974877 |
agatggtttatat |
11974889 |
T |
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