View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11262_low_9 (Length: 261)
Name: NF11262_low_9
Description: NF11262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11262_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 148 - 248
Target Start/End: Original strand, 2523621 - 2523721
Alignment:
| Q |
148 |
ctatcctatttaaaagaggaacaaaaacatatcattttttaaaaggggaccttaagccaaacttatcaaattttccaaaaaatgaaatttaatttttaca |
247 |
Q |
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| T |
2523621 |
ctatcctatttaaaagaggaacaaaaacatataattttttaaaaggggaccttaagccaaacttatcaaattttccaaaaaatgaaatttaatttttaca |
2523720 |
T |
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| Q |
248 |
g |
248 |
Q |
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| T |
2523721 |
g |
2523721 |
T |
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Target: chr3; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 15 - 82
Target Start/End: Original strand, 2523488 - 2523555
Alignment:
| Q |
15 |
cagagaagcacaaatgccatatcaataggtacaatttctagtatcttaacttatcttttaattacatg |
82 |
Q |
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| T |
2523488 |
cagagaagcacaaatgccatatcaataggtacaatttctagtatcttaacttatcttttcattacatg |
2523555 |
T |
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