View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11263_low_2 (Length: 252)
Name: NF11263_low_2
Description: NF11263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11263_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 35766750 - 35766993
Alignment:
| Q |
1 |
taatacaaaccatggtgtgaatgatggtgcgtatctgaatggttgtctaaattggttagcccttcgcaataaacttttttatgttggtgtttctggttag |
100 |
Q |
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| T |
35766750 |
taatacaaaccatggtgtgaatgatggtgtgtatctgaatggttgtctaaattggttggcccttcgcaataaacttttttatgttggtgtttctggttag |
35766849 |
T |
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| Q |
101 |
gagaaaatggatattagagaatttgtgattgtttcgcttgacctgggaacatagagacgtacacacagttgatgcctcctgggggttttgatgaaacgtc |
200 |
Q |
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| T |
35766850 |
gagaaaatggatattagagaatttgtgattgtttcgcttgacctgggaacatagagacgtacacacagttgatgcctcctgggggttttgatgaaacgtc |
35766949 |
T |
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| Q |
201 |
agctattgaaccattgttaagtatattgatggactgtctctgct |
244 |
Q |
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| T |
35766950 |
agctattgaaccattgttaagtatattgatggactgtctttgct |
35766993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 102 - 244
Target Start/End: Original strand, 36260088 - 36260228
Alignment:
| Q |
102 |
agaaaatggatattagagaatttgtgattgtttcgcttgacctgggaacatagagacgtacacacagttgatgcctcctgggggttttgatgaaacgtca |
201 |
Q |
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| T |
36260088 |
agaaaatgaatgttaaaaaatttgtgattgtttcacttgatctggaaaca--gagacatacacaaagttgatgcctccttgcggttttgatgaaatgtca |
36260185 |
T |
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| Q |
202 |
gctattgaaccattgttaagtatattgatggactgtctctgct |
244 |
Q |
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| T |
36260186 |
cctattgagccatcggtatgtatattgttggattgtctttgct |
36260228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 196
Target Start/End: Original strand, 36255221 - 36255293
Alignment:
| Q |
122 |
tttgtgattgtttcgcttgacctgggaacatagagacgtacacacagttgatgcctcctgggggttttgatgaaa |
196 |
Q |
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| T |
36255221 |
tttgtgattgttgcgcttgatctgggaac--agagacatacacgcagctgatgcctccgcgtggttttgatgaaa |
36255293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 244
Target Start/End: Original strand, 36262908 - 36263028
Alignment:
| Q |
122 |
tttgtgattgtttcgcttgacctgggaacatagagacgtacacacagttgatgcctcctgggggttttgatgaaacgtcagctattgaaccattgttaag |
221 |
Q |
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| T |
36262908 |
tttgtgattgtttcatttgatctaggaaca--gagacatacacacagccaatgcctccgtgtggttttgatgaaatgtcacctgttgagccatcaatatg |
36263005 |
T |
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| Q |
222 |
tatattgatggactgtctctgct |
244 |
Q |
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| T |
36263006 |
tatattgatggactgtctttgct |
36263028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 20495533 - 20495586
Alignment:
| Q |
13 |
tggtgtgaatgatggtgcgtatctgaatggttgtctaaattggttagcccttcg |
66 |
Q |
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| T |
20495533 |
tggtgtgaatgatggtgtgtatttgaatggtagtctgaattggttggctcttcg |
20495586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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