View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11263_low_3 (Length: 245)
Name: NF11263_low_3
Description: NF11263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11263_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 20 - 233
Target Start/End: Original strand, 36262815 - 36263029
Alignment:
| Q |
20 |
ggtgtttatctgaatggcacttttaattggttggcacttcggagtgaattccgtcctcatctttatgattggaagaacactgatgttaaggactttgtga |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36262815 |
ggtgtttatctgaatggcacttttaattggttggcacttcggagtgaattccgtcctcatctttatgattggaagaacactgatgttaaggactttgtga |
36262914 |
T |
|
| Q |
120 |
ttgtttcatttgatctaggaacagagacatacacaca-ccgatgcctccgtgtggttttgatgaaatgtcacctgttgagccatcaatatgtatattgat |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36262915 |
ttgtttcatttgatctaggaacagagacatacacacagccaatgcctccgtgtggttttgatgaaatgtcacctgttgagccatcaatatgtatattgat |
36263014 |
T |
|
| Q |
219 |
ggactgtctctgctt |
233 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
36263015 |
ggactgtctttgctt |
36263029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 20 - 233
Target Start/End: Original strand, 36255128 - 36255342
Alignment:
| Q |
20 |
ggtgtttatctgaatggcacttttaattggttggcacttcggagtgaattccgtcctcatctttatgattggaagaacactgatgttaaggactttgtga |
119 |
Q |
| |
|
||||| ||| ||||||| | |||||||||||||||||||||| ||||||| |||||| | |||||||||||| |||| | |||||||||||||||||| |
|
|
| T |
36255128 |
ggtgtgtatttgaatggtagttttaattggttggcacttcggcgtgaatttcgtcctggttgttatgattggaataacaataatgttaaggactttgtga |
36255227 |
T |
|
| Q |
120 |
ttgtttcatttgatctaggaacagagacatacacaca-ccgatgcctccgtgtggttttgatgaaatgtcacctgttgagccatcaatatgtatattgat |
218 |
Q |
| |
|
||||| | ||||||| ||||||||||||||||| || | |||||||||| |||||||||||||||| ||||||| |||||||||||||| ||||||||| |
|
|
| T |
36255228 |
ttgttgcgcttgatctgggaacagagacatacacgcagctgatgcctccgcgtggttttgatgaaatatcacctgctgagccatcaatatctatattgat |
36255327 |
T |
|
| Q |
219 |
ggactgtctctgctt |
233 |
Q |
| |
|
||| ||||| ||||| |
|
|
| T |
36255328 |
ggattgtctttgctt |
36255342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 113 - 233
Target Start/End: Original strand, 36260108 - 36260229
Alignment:
| Q |
113 |
tttgtgattgtttcatttgatctaggaacagagacatacacacacc-gatgcctccgtgtggttttgatgaaatgtcacctgttgagccatcaatatgta |
211 |
Q |
| |
|
||||||||||||||| ||||||| | |||||||||||||||| | ||||||||| || ||||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
36260108 |
tttgtgattgtttcacttgatctggaaacagagacatacacaaagttgatgcctccttgcggttttgatgaaatgtcacctattgagccatcggtatgta |
36260207 |
T |
|
| Q |
212 |
tattgatggactgtctctgctt |
233 |
Q |
| |
|
||||| |||| ||||| ||||| |
|
|
| T |
36260208 |
tattgttggattgtctttgctt |
36260229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 160 - 233
Target Start/End: Original strand, 20495690 - 20495763
Alignment:
| Q |
160 |
atgcctccgtgtggttttgatgaaatgtcacctgttgagccatcaatatgtatattgatggactgtctctgctt |
233 |
Q |
| |
|
|||||||| |||||||||||| || |||||||||||||||||| ||||||||||||| ||||| ||| ||||| |
|
|
| T |
20495690 |
atgcctcctagtggttttgatggaaagtcacctgttgagccatccatatgtatattgagggactatctttgctt |
20495763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 22 - 142
Target Start/End: Original strand, 19361205 - 19361325
Alignment:
| Q |
22 |
tgtttatctgaatggcacttttaattggttggcacttcggagtgaattccgtcctcatctttatgattggaagaacactgatgttaaggactttgtgatt |
121 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||| ||||||| |||||| | | |||||||||||||||| | |||||||||| ||||||||| |
|
|
| T |
19361205 |
tgtttatctgaatggtagttttaattggttggcacttcaacgtgaatttcgtcctggtttatatgattggaagaacattaatgttaaggaatttgtgatt |
19361304 |
T |
|
| Q |
122 |
gtttcatttgatctaggaaca |
142 |
Q |
| |
|
|||||| ||||||| |||||| |
|
|
| T |
19361305 |
gtttcacttgatctgggaaca |
19361325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 233
Target Start/End: Original strand, 19358960 - 19359113
Alignment:
| Q |
81 |
tttatgattggaagaacactgatgttaaggactttgtgattgtttcatttgatctaggaacagagacatacacaca-ccgatgcctccgtgtggttttga |
179 |
Q |
| |
|
|||||| ||||||||| | |||||||| | ||||||||||||||| ||||| |||||| ||||||||||| | ||||||||| ||||||||| | |
|
|
| T |
19358960 |
tttatgcttggaagaaaatgaatgttaagaaatttgtgattgtttcacttgattagggaacaaagacatacacaaagttgatgcctccttgtggttttta |
19359059 |
T |
|
| Q |
180 |
tgaaatgtcacctgttgagccatcaatatgtatattgatggactgtctctgctt |
233 |
Q |
| |
|
||| ||||||| | || ||||| ||||||||||| |||| ||||| ||||| |
|
|
| T |
19359060 |
tgacatgtcacttattaagccactcgtatgtatattgttggattgtctttgctt |
19359113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 233
Target Start/End: Original strand, 35766871 - 35766994
Alignment:
| Q |
113 |
tttgtgattgtttcatttgatctaggaaca--gagacatacacacacc-gatgcctccgtgtggttttgatgaaatgtcacctgttgagccatcaatatg |
209 |
Q |
| |
|
|||||||||||||| |||| || |||||| ||||| |||||||| ||||||||| | ||||||||||||| |||| || |||| |||| || | |
|
|
| T |
35766871 |
tttgtgattgtttcgcttgacctgggaacatagagacgtacacacagttgatgcctcctgggggttttgatgaaacgtcagctattgaaccattgttaag |
35766970 |
T |
|
| Q |
210 |
tatattgatggactgtctctgctt |
233 |
Q |
| |
|
|||||||||||||||||| ||||| |
|
|
| T |
35766971 |
tatattgatggactgtctttgctt |
35766994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 2581217 - 2581284
Alignment:
| Q |
159 |
gatgcctccgtgtggttttgatgaaatgtcacctgttga---gccatcaatatgtatattgatggact |
223 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||||| | ||||||| |||||||||||| ||||| |
|
|
| T |
2581217 |
gatgcctccatgtggttttgatgaaatgtcatctgttaagccgccatcattatgtatattgaaggact |
2581284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 189
Target Start/End: Original strand, 29156893 - 29156977
Alignment:
| Q |
106 |
taaggactttgtgattgtttcatttgatctaggaacagagacatacacacacc-gatgcctccgtgtggttttgatgaaatgtca |
189 |
Q |
| |
|
|||||| ||||| ||||||||| ||||| | | ||||||| |||||||||| |||| |||| |||| |||||||||||||||| |
|
|
| T |
29156893 |
taaggaatttgtcattgtttcacttgatgtggaaacagagtcatacacacagttgatgtctccctgtgcttttgatgaaatgtca |
29156977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University