View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11263_low_4 (Length: 232)
Name: NF11263_low_4
Description: NF11263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11263_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 7 - 220
Target Start/End: Original strand, 7266324 - 7266537
Alignment:
| Q |
7 |
ccactccaatgaagtaaactcaccgggcccggatgcaaatccctacaaagcccacggaaattatcaccgccaagcccatgctgattccaccgatgatcaa |
106 |
Q |
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| T |
7266324 |
ccactccaatgaagtaaactcaccgggcccggatgcaaatcccgacaaagcccatggaaattatcaccgccaagcccatgttgattccaccgatgatcaa |
7266423 |
T |
|
| Q |
107 |
ccggaactattttacctgcgaaaacaagcagaaacggcggcaatgaaccaagctcataaatcctcattctcttctgaagctccatccattccgtcatctg |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
7266424 |
ccggaactattttacctgcgaaaacaagcagaaacggcggcaatgaaccaagctcatagatcctcattctcttctgaagctccatccattccgtcatctg |
7266523 |
T |
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| Q |
207 |
cgtcgtataatctc |
220 |
Q |
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|||||||||||||| |
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| T |
7266524 |
cgtcgtataatctc |
7266537 |
T |
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Target: chr8 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 7 - 194
Target Start/End: Complemental strand, 33346773 - 33346586
Alignment:
| Q |
7 |
ccactccaatgaagtaaactcaccgggcccggatgcaaatccctacaaagcccacggaaattatcaccgccaagcccatgctgattccaccgatgatcaa |
106 |
Q |
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||||||||||| | |||||||||||||| ||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||| ||||| | |
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| T |
33346773 |
ccactccaatgcaacaaactcaccgggcctggatgcaaatcccgacaaagcccacgaaaattatcaccgccgagcccatgctgattccaccggtgatcca |
33346674 |
T |
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| Q |
107 |
ccggaactattttacctgcgaaaacaagcagaaacggcggcaatgaaccaagctcataaatcctcattctcttctgaagctccatcca |
194 |
Q |
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| T |
33346673 |
ccggcgtaatcctcccggcaaaaaccaacaaaaacggcggcaacgaaccaagctcatagattctcattctcttctgcaactccatcca |
33346586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 7 - 194
Target Start/End: Original strand, 52163915 - 52164102
Alignment:
| Q |
7 |
ccactccaatgaagtaaactcaccgggcccggatgcaaatccctacaaagcccacggaaattatcaccgccaagcccatgctgattccaccgatgatcaa |
106 |
Q |
| |
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||||||||||| | |||||||| || || ||||| | || |||||||| ||||| ||||||||||| ||||| ||||| |||||||||| |||||| | |
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| T |
52163915 |
ccactccaatgcaacaaactcacaggaccgggatgaagatttctacaaagaccacgaaaattatcaccaccaagtccatgttgattccacctatgatcca |
52164014 |
T |
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| Q |
107 |
ccggaactattttacctgcgaaaacaagcagaaacggcggcaatgaaccaagctcataaatcctcattctcttctgaagctccatcca |
194 |
Q |
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| T |
52164015 |
ccggagcaatattcccggcaaaaacaagcaaaaacggcggcaacgaacccaattcatagatcctcatcctcttctgcaactccatcca |
52164102 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 7 - 198
Target Start/End: Original strand, 6635020 - 6635211
Alignment:
| Q |
7 |
ccactccaatgaagtaaactcaccgggcccggatgcaaatccctacaaagcccacggaaattatcaccgccaagcccatgctgattccaccgatgatcaa |
106 |
Q |
| |
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||||||||||| | ||||||||| || || ||||| | ||| |||||||| || || ||||||||||| ||||| ||||| |||||||| | |||||| | |
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| T |
6635020 |
ccactccaatgcaataaactcactggaccaggatgaagatctctacaaagacctcgaaaattatcaccaccaagaccatgttgattccatctatgatcca |
6635119 |
T |
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| Q |
107 |
ccggaactattttacctgcgaaaacaagcagaaacggcggcaatgaaccaagctcataaatcctcattctcttctgaagctccatccattcc |
198 |
Q |
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| ||||| |||| ||||| |||||||||| ||| || |||||||||||||| ||||| || ||||| ||||| || | |||||||||||| |
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| T |
6635120 |
ctggaacaatttcccctgcaaaaacaagcaaaaaaggtggcaatgaaccaagttcatagattctcatcctcttttgtaattccatccattcc |
6635211 |
T |
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