View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11265_high_13 (Length: 338)
Name: NF11265_high_13
Description: NF11265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11265_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 179 - 327
Target Start/End: Original strand, 41653999 - 41654148
Alignment:
| Q |
179 |
caacagaatgagtacaaaagaataatatcacctctgaaatatcagacaagatgtgttgctgcttttccagatcaacaaggttttttggtatgtattcact |
278 |
Q |
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| T |
41653999 |
caacagaatgagtacaaaagaataatatcacctctgaaatatcagacaagatgtgtcgctgcttttcctgatcaacaaggttttttggtatgtattcact |
41654098 |
T |
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| Q |
279 |
cctcacttacattcaaatacagttttgtttta-tttatttaattccatca |
327 |
Q |
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| T |
41654099 |
cctcacttacattcaaatacagttttgttttattttatttaattccatca |
41654148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 9 - 137
Target Start/End: Original strand, 41653821 - 41653957
Alignment:
| Q |
9 |
ataaattttcataatgctgttgctta--gctttgtacgaaataggtcggtttccaat------cttataatttttcaacatcatgtgaaatctgcttttt |
100 |
Q |
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| T |
41653821 |
ataaattttcataatgctgttgcttatagctttgtacggaataggtcggtttccaattagttgcttataatttttcaacatcatgtgaaatctgcttttt |
41653920 |
T |
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| Q |
101 |
ctctacgtgagtagttattgatttcaataaatgtcga |
137 |
Q |
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| T |
41653921 |
ctctacgtgagtagttattgatttcaataaatgtcga |
41653957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 179 - 302
Target Start/End: Complemental strand, 28816819 - 28816696
Alignment:
| Q |
179 |
caacagaatgagtacaaaagaataatatcacctctgaaatatcagacaagatgtgttgctgcttttccagatcaacaaggttttttggtatgtattcact |
278 |
Q |
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||||||| |||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
28816819 |
caacagactgagtacaaaaggatagtatcacccctgaaatatcagacaagatgtgttgctgcttttccagatcagcaaggttttttggtatgtactcact |
28816720 |
T |
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| Q |
279 |
cctcacttacattcaaatacagtt |
302 |
Q |
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|||||||| |||||| |||||||| |
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| T |
28816719 |
cctcacttgcattcagatacagtt |
28816696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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