View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11265_high_14 (Length: 334)
Name: NF11265_high_14
Description: NF11265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11265_high_14 |
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| [»] scaffold0064 (1 HSPs) |
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| [»] scaffold0115 (1 HSPs) |
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Alignment Details
Target: scaffold0064 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 19 - 325
Target Start/End: Original strand, 55564 - 55870
Alignment:
| Q |
19 |
gcatttactttcttcaaggaaatccaaatctcatgatgaacccttctttgagacagttcaaggctttgcctgaatctcatttgacagatttaaatctcaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55564 |
gcatttactttcttcaaggaaatccaaatctcatgatgaacccttctttgagacagttcaaggctttgcctgaatctcatttgacagatttaaatctcaa |
55663 |
T |
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| Q |
119 |
ttattctctcactgattttgctggatttgggtttgacccgaaaactaatgactataaagttgttgtgttaagagacatttggctaaagaaaacagatgaa |
218 |
Q |
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||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
55664 |
ttattctctcactgattttgctggatttgggctcgacccgaaaactaatgactataaagttgttgtgctaagagacatttggctaaagaaaacagatgaa |
55763 |
T |
|
| Q |
219 |
agacaaaaagggcattggacagctgagttatatagtcttaattctaactcttggagaaagcttgaaaatgcagctcttcctctttctattgaaatttcag |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
55764 |
agacaaaaagggcattggacagctgagttatatagtcttaattctaactcttggagaaagcttgaaaatgcagctcttcctcttcctattgaaatttcag |
55863 |
T |
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| Q |
319 |
gttcatc |
325 |
Q |
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||||||| |
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| T |
55864 |
gttcatc |
55870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 24 - 325
Target Start/End: Original strand, 21087603 - 21087904
Alignment:
| Q |
24 |
tactttcttcaaggaaatccaaatctcatgatgaacccttctttgagacagttcaaggctttgcctgaatctcatttgacagatttaaatctcaattatt |
123 |
Q |
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||||| |||||||||||||||||| || ||||||| ||||||| ||||||||||||||| |||||||| ||||| ||||||| |||| || ||||| |
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| T |
21087603 |
tacttacttcaaggaaatccaaatgtcttgatgaatgcttctttacaacagttcaaggctttacctgaatcccatttaacagattcaaatggcatttatt |
21087702 |
T |
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| Q |
124 |
ctctcactgattttgctggatttgggtttgacccgaaaactaatgactataaagttgttgtgttaagagacatttggctaaagaaaacagatgaaagaca |
223 |
Q |
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|||||||||||| |||| | ||||| ||||| || ||||||||||||||||||||| ||||| | | ||| ||||| ||||| |||||||||||||||| |
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| T |
21087703 |
ctctcactgattatgctagttttggttttgatcctaaaactaatgactataaagttattgtgcttaaagatctttggttaaaggaaacagatgaaagaca |
21087802 |
T |
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| Q |
224 |
aaaagggcattggacagctgagttatatagtcttaattctaactcttggagaaagcttgaaaatgcagctcttcctctttctattgaaatttcaggttca |
323 |
Q |
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||||||| ||||||||| ||||||||||||||||||||| |||||||||| ||||||||| || | | ||||||||| | |||||||||| |||||| |
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| T |
21087803 |
aaaagggtattggacaggtgagttatatagtcttaattcaaactcttggaaaaagcttgatgctgaaacccttcctcttcccattgaaatttgtggttca |
21087902 |
T |
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| Q |
324 |
tc |
325 |
Q |
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|| |
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| T |
21087903 |
tc |
21087904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: scaffold0115
Description:
Target: scaffold0115; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 19 - 326
Target Start/End: Original strand, 16061 - 16368
Alignment:
| Q |
19 |
gcatttactttcttcaaggaaatccaaatctcatgatgaacccttctttgagacagttcaaggctttgcctgaatctcatttgacagatttaaatctcaa |
118 |
Q |
| |
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|||| ||||| |||||||||||||||||| || |||||||||||||| | |||||||||||| |||| |||||||| ||||||||||||| |||| | |
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| T |
16061 |
gcatatacttccttcaaggaaatccaaatgtcttgatgaacccttctctaagacagttcaagtctttacctgaatcccatttgacagattcaaatggtat |
16160 |
T |
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| Q |
119 |
ttattctctcactgattttgctggatttgggtttgacccgaaaactaatgactataaagttgttgtgttaagagacatttggctaaagaaaacagatgaa |
218 |
Q |
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||||||||| ||||||| |||| | ||||| ||||| || |||| ||||||||||||||||||| || | | ||| |||||| ||||| |||||||||| |
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| T |
16161 |
ttattctcttactgattatgctagttttggttttgatcccaaaagtaatgactataaagttgttatgctcaaagatatttggttaaaggaaacagatgat |
16260 |
T |
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| Q |
219 |
agacaaaaagggcattggacagctgagttatatagtcttaattctaactcttggagaaagcttgaaaatgcagctcttcctctttctattgaaatttcag |
318 |
Q |
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||||||||||| |||||||||||||||||| |||| ||| ||||||||||||||||| ||||| | | ||||||||||| | |||||||||| | |
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| T |
16261 |
agacaaaaaggtttttggacagctgagttatacagtcataagtctaactcttggagaaaacttgatgctaaaactcttcctcttcccattgaaatttgtg |
16360 |
T |
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| Q |
319 |
gttcatct |
326 |
Q |
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|||||||| |
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| T |
16361 |
gttcatct |
16368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 277
Target Start/End: Original strand, 26813450 - 26813491
Alignment:
| Q |
236 |
gacagctgagttatatagtcttaattctaactcttggagaaa |
277 |
Q |
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||||||| |||||||||||||||||| |||||||||||||| |
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| T |
26813450 |
gacagctaggttatatagtcttaattccaactcttggagaaa |
26813491 |
T |
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