View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11265_high_15 (Length: 299)

Name: NF11265_high_15
Description: NF11265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11265_high_15
NF11265_high_15
[»] chr1 (1 HSPs)
chr1 (19-288)||(36926288-36926557)
[»] chr3 (2 HSPs)
chr3 (27-231)||(49608257-49608461)
chr3 (257-288)||(49608458-49608489)
[»] chr2 (2 HSPs)
chr2 (19-129)||(386538-386648)
chr2 (172-232)||(42692170-42692230)
[»] chr7 (1 HSPs)
chr7 (50-288)||(46709065-46709303)
[»] chr8 (6 HSPs)
chr8 (161-225)||(6456147-6456211)
chr8 (161-288)||(6262233-6262360)
chr8 (161-219)||(6362116-6362174)
chr8 (161-242)||(6330783-6330864)
chr8 (161-221)||(6351231-6351291)
chr8 (161-221)||(6423148-6423208)


Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 19 - 288
Target Start/End: Complemental strand, 36926557 - 36926288
Alignment:
Q  19 tgaaagaccaagaacagcttgaaactgtgaagtgattgttttcagaaaagctttgtcaggattttccaaaagttcattgtactcttgagttcctttttca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36926557 tgaaagaccaagaacagcttgaaactgtgaagtgattgttttcagaaaagctttgtcaggattttccaaaagttcattgtactcttgagttcctttttca 36926458  T
Q  119 ggcatgagtcgtcggctcatagaaggacgactcggtggatagcctccatatggatactgtccaaagttgactgcagcatggagagctgaagcaatccata 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36926457 ggcatgagtcgtcggctcatagaaggacgactcggtggatagcctccatatggatactgtccaaagttgactgcagcatggagagctgaagcaatccata 36926358  T
Q  219 taataatagtgcaagtttcaatcagatctttgagagtatgcatctttggccaccaaggctcatctttctt 288  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  36926357 taataatagtgcaagtttcaatcagctcttcgagagtatgcatctttggccaccaaggctcatctttctt 36926288  T

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Target: chr3 (Bit Score: 109; Significance: 7e-55; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 27 - 231
Target Start/End: Original strand, 49608257 - 49608461
Alignment:
Q  27 caagaacagcttgaaactgtgaagtgattgttttcagaaaagctttgtcaggattttccaaaagttcattgtactcttgagttcctttttcaggcatgag 126  Q
    ||||||||||||||||||||||||| ||||| |||| |||||  |||||||||||||||| ||||| |||||| |||||||| | |||||||||||||||    
T  49608257 caagaacagcttgaaactgtgaagtaattgtcttcaaaaaaggcttgtcaggattttccacaagttgattgtattcttgagtccttttttcaggcatgag 49608356  T
Q  127 tcgtcggctcatagaaggacgactcggtggatagcctccatatggatactgtccaaagttgactgcagcatggagagctgaagcaatccatataataata 226  Q
    ||  || |||| || || ||  || ||||||||||||||||||||||| ||||||||||||||  || ||||||||| ||||||||||||||||||||||    
T  49608357 tcaccgactcagagtagaactgcttggtggatagcctccatatggataatgtccaaagttgacaacaacatggagagttgaagcaatccatataataata 49608456  T
Q  227 gtgca 231  Q
    |||||    
T  49608457 gtgca 49608461  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 288
Target Start/End: Original strand, 49608458 - 49608489
Alignment:
Q  257 tgcatctttggccaccaaggctcatctttctt 288  Q
    ||||||||||||||||||||||||||||||||    
T  49608458 tgcatctttggccaccaaggctcatctttctt 49608489  T

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Target: chr2 (Bit Score: 67; Significance: 9e-30; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 386648 - 386538
Alignment:
Q  19 tgaaagaccaagaacagcttgaaactgtgaagtgattgttttcagaaaagctttgtcaggattttccaaaagttcattgtactcttgagttcctttttca 118  Q
    |||||| |||||||||||||||||||||||||| |||||||| | |||||| |||| ||||||||||  |||||| ||||| |||||||||||| |||||    
T  386648 tgaaaggccaagaacagcttgaaactgtgaagtaattgtttttaaaaaagccttgtgaggattttcctcaagttcgttgtattcttgagttcctatttca 386549  T
Q  119 ggcatgagtcg 129  Q
    |||||||||||    
T  386548 ggcatgagtcg 386538  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 232
Target Start/End: Original strand, 42692170 - 42692230
Alignment:
Q  172 atactgtccaaagttgactgcagcatggagagctgaagcaatccatataataatagtgcaa 232  Q
    |||||||||||| || || || ||||| |||||||||||||||||||| | | ||||||||    
T  42692170 atactgtccaaaattaacagctgcatgaagagctgaagcaatccatatgacagtagtgcaa 42692230  T

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Target: chr7 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 50 - 288
Target Start/End: Original strand, 46709065 - 46709303
Alignment:
Q  50 gtgattgttttcagaaaagctttgtcaggattttccaaaagttcattgtactcttgagttcctttttcaggcatgagtcgtcggctcatagaaggacgac 149  Q
    ||||||||||||| ||||||||| |||||||||  || ||||||||  ||||||  ||||||||| |||||||||| ||| || || || |  |||||      
T  46709065 gtgattgttttcaaaaaagctttatcaggatttgtcacaagttcatcatactctatagttcctttctcaggcatgaatcggcgacttattgttggacggt 46709164  T
Q  150 tcggtggatagcctccatatggatactgtccaaagttgactgcagcatggagagctgaagcaatccatataataatagtgcaagtttcaatcagatcttt 249  Q
    | ||||  || ||| || | ||||| ||||||||||| || || ||||| ||||||||||||||||||||||| || ||||| |||||  |||  ||||     
T  46709165 ttggtgagtaacctgcaaaaggatattgtccaaagtttacagctgcatgtagagctgaagcaatccatataatgattgtgcatgtttccgtcaactcttc 46709264  T
Q  250 gagagtatgcatctttggccaccaaggctcatctttctt 288  Q
     |  || ||||||||||||||||||||||| | ||||||    
T  46709265 cactgtttgcatctttggccaccaaggctcgtttttctt 46709303  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 161 - 225
Target Start/End: Original strand, 6456147 - 6456211
Alignment:
Q  161 cctccatatggatactgtccaaagttgactgcagcatggagagctgaagcaatccatataataat 225  Q
    |||||||| ||||||||||||||||| ||||| ||||| |||||||||||| ||||||| |||||    
T  6456147 cctccataaggatactgtccaaagttaactgctgcatgaagagctgaagcagtccatatgataat 6456211  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 288
Target Start/End: Original strand, 6262233 - 6262360
Alignment:
Q  161 cctccatatggatactgtccaaagttgactgcagcatggagagctgaagcaatccatataataatagtgcaagtttcaatcagatctttgagagtatgca 260  Q
    |||||||| ||||| |||||||| || || || ||||| |||||||||||| ||||||| |||||| |||||  || |||||  |||| | |||| ||||    
T  6262233 cctccatacggatattgtccaaaattaacagctgcatgaagagctgaagcagtccatatgataatactgcaaacttgaatcaactcttcgcgagtttgca 6262332  T
Q  261 tctttggccaccaaggctcatctttctt 288  Q
    | || |||||||| ||||| ||||||||    
T  6262333 ttttcggccaccatggctcgtctttctt 6262360  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 219
Target Start/End: Original strand, 6362116 - 6362174
Alignment:
Q  161 cctccatatggatactgtccaaagttgactgcagcatggagagctgaagcaatccatat 219  Q
    |||||||| ||||| |||||||| || ||||| ||||| || |||||||||||||||||    
T  6362116 cctccatacggatattgtccaaaattaactgctgcatgaagtgctgaagcaatccatat 6362174  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 242
Target Start/End: Original strand, 6330783 - 6330864
Alignment:
Q  161 cctccatatggatactgtccaaagttgactgcagcatggagagctgaagcaatccatataataatagtgcaagtttcaatca 242  Q
    |||||||||||||| || ||||| || || || |||||  | ||||||||||||||||| |  |||||||||| ||||||||    
T  6330783 cctccatatggatattgaccaaaattaacagctgcatgatgtgctgaagcaatccatatgaggatagtgcaagcttcaatca 6330864  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 221
Target Start/End: Original strand, 6351231 - 6351291
Alignment:
Q  161 cctccatatggatactgtccaaagttgactgcagcatggagagctgaagcaatccatataa 221  Q
    |||||||||||||| ||||| || || || || ||||| || |||||||||||||||||||    
T  6351231 cctccatatggatattgtccgaaattaacagctgcatgaagtgctgaagcaatccatataa 6351291  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 221
Target Start/End: Original strand, 6423148 - 6423208
Alignment:
Q  161 cctccatatggatactgtccaaagttgactgcagcatggagagctgaagcaatccatataa 221  Q
    ||||||||||| || |||||||| || || || ||||| || |||||||||||||||||||    
T  6423148 cctccatatgggtattgtccaaaattaacagctgcatgaagtgctgaagcaatccatataa 6423208  T

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