View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11265_high_25 (Length: 249)
Name: NF11265_high_25
Description: NF11265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11265_high_25 |
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Alignment Details
Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 71 - 240
Target Start/End: Original strand, 19149419 - 19149588
Alignment:
| Q |
71 |
gttgaactctgatctgggtttttcctttttcgcacctttacttaataaccttgaagctttgatcttttatcttataaaaatttaatctgtttgattttga |
170 |
Q |
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| T |
19149419 |
gttgaactctgatctgggtttttcctttttcacacctttacttaataaccttgaagctttgatcttttatcttataaaaatttaatctgtttgattttga |
19149518 |
T |
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| Q |
171 |
gctataatcatgggtggttgtttttgtaaaaaggaatcagagccagatcataaacatgttggtgtctctg |
240 |
Q |
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| T |
19149519 |
gctataatcatgggtggttgtttttgtaaaaaggaatcagagccagatcataaacatgttggtgtttctg |
19149588 |
T |
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Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 71 - 235
Target Start/End: Original strand, 19430459 - 19430623
Alignment:
| Q |
71 |
gttgaactctgatctgggtttttcctttttcgcacctttacttaataaccttgaagctttgatcttttatcttataaaaatttaatctgtttgattttga |
170 |
Q |
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| T |
19430459 |
gttgaactctgatatgggtttttcctttttcacacctatacttaataactttgaagctttgatcttttatcttataaaaatttcatctttttgatttaga |
19430558 |
T |
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| Q |
171 |
gctataatcatgggtggttgtttttgtaaaaaggaatcagagccagatcataaacatgttggtgt |
235 |
Q |
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| T |
19430559 |
gctataatcatgggtgattgtttttgtaaaaaggaatgagagccagatcatagacatgttggtgt |
19430623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 72 - 240
Target Start/End: Original strand, 40531424 - 40531600
Alignment:
| Q |
72 |
ttgaactctgatctgggttttt-cctttttcgcacctttacttaataaccttgaagctttgatcttttatcttataaaaatttaatctgtttg------- |
163 |
Q |
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||||| |||||||||||||||| |||||||| ||||||||| |||||| |||||| |||| |||| |||||||||||||| | || | |||| |
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| T |
40531424 |
ttgaattctgatctgggttttttcctttttcatacctttactaaataactttgaagatttgttcttgtatcttataaaaatctcatttttttggtttttg |
40531523 |
T |
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| Q |
164 |
attttgagctataatcatgggtggttgtttttgtaaaaaggaatcagagccagatcataaacatgttggtgtctctg |
240 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||| |||||||| |||| |
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| T |
40531524 |
attttgagctataatcatgggtggttgtttgagtaaaaaggaatcaaagccagatcatagacacgttggtgtttctg |
40531600 |
T |
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