View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11265_high_6 (Length: 459)
Name: NF11265_high_6
Description: NF11265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11265_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 17 - 449
Target Start/End: Original strand, 35808334 - 35808766
Alignment:
| Q |
17 |
catatacaacagaagcactccttttgattaatcacacaattcagaacaattacaacaaaataagggaaagggggtgataacagcattaaaatatataagg |
116 |
Q |
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| T |
35808334 |
catatacaacagaagcactccttttgattaatcacacaattcagaacaattacaacaaaataagggaaagggggtgataacagcattaaaatatataagg |
35808433 |
T |
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| Q |
117 |
aatttgaacgaaatcatcgacagtttcatttcgagtaaacgattgagacgaagaactgtgacttaaattatcactgaagtcactgcaagtgaaaaactca |
216 |
Q |
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| T |
35808434 |
aatttgaacgaaatcatcgacagtttcatttcgagtaaacgattgagacgaagaactgtgacttaaattatcactgaagtcactgcaagtgaaaaactca |
35808533 |
T |
|
| Q |
217 |
ggaaaaggtggcaaactaacatttgaattcatcatatcattggaaaaagaagaagtaggagtagcagcagccgcagcgcaacgagccagacgatcctttg |
316 |
Q |
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| T |
35808534 |
ggaaaaggtggcaaactaacatttgaattcatcatatcattggaaaaagaagaagtaggagtagcagcagccgcagcgcaacgagccaggcgatcctttg |
35808633 |
T |
|
| Q |
317 |
caatggcaagatcatgttgaagttcaaccatcttcctttgcaaaagtgctatagcacctatgcatccatagacagggtctctaagccttgcatcagcttc |
416 |
Q |
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| T |
35808634 |
caatggcaagatcatgttgaagttcaaccatcttcctttgcaaaagtgctatagcacctatgcatccatagacagggtctctaagccttgcatcagcttc |
35808733 |
T |
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| Q |
417 |
ataagccaaagaattcacagtttcttccctttg |
449 |
Q |
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| T |
35808734 |
ataagccaaagaattcacagtttcttccctttg |
35808766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 295 - 449
Target Start/End: Original strand, 32036245 - 32036399
Alignment:
| Q |
295 |
caacgagccagacgatcctttgcaatggcaagatcatgttgaagttcaaccatcttcctttgcaaaagtgctatagcacctatgcatccatagacagggt |
394 |
Q |
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|||||||| ||||| ||||| |||||||| | |||||| |||||||| | ||||||||||||||| | ||||| | ||| |||||||| || || |||| |
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| T |
32036245 |
caacgagcaagacgttccttagcaatggccaaatcatgctgaagttccatcatcttcctttgcaacatagctatggaaccaatgcatccgtaaactgggt |
32036344 |
T |
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| Q |
395 |
ctctaagccttgcatcagcttcataagccaaagaattcacagtttcttccctttg |
449 |
Q |
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||||||||||||| |||||||||||||| | ||||||||| || ||||| ||||| |
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| T |
32036345 |
ctctaagccttgcttcagcttcataagcaagagaattcactgtgtcttctctttg |
32036399 |
T |
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