View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11265_low_11 (Length: 353)
Name: NF11265_low_11
Description: NF11265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11265_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 11 - 338
Target Start/End: Original strand, 5971766 - 5972099
Alignment:
| Q |
11 |
atgaagcaagtatttgactcaagaaattcaaagtttaatggcgttgagataacagtcaaca-agtaattttacttttttccctnnnnnnnn-gagtaatt |
108 |
Q |
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| T |
5971766 |
atgaagcaagtatttgactcacaaaattcaaagtttaatggcgttgagataacagtcaacagagtaattttatttttttccctaaaaaaaaagagtaatt |
5971865 |
T |
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| Q |
109 |
ttaattttttgtatgggaacagaacgaatcaactagtgtggaatatatgtcttcttnnnnnnngaaatagtgtaataatgttatgttaggcagtgattga |
208 |
Q |
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| T |
5971866 |
ttatttttttgtatgggaacagaacgaatcaactcgtgtggaatatatgtcttcttaaaaaaagaaatagtgtaatattgttatgttaggcagtgattga |
5971965 |
T |
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| Q |
209 |
atgcaattattttttaaagaaggcaaaatgcaatatattaaaaccgacaaataaatcataaccaacataagctatgtaaggaagctt----nnnnnnnnc |
304 |
Q |
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|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5971966 |
atgcaattattttttaaaaaaggcaaaatgaaatatattaaaaccgacaaataaatcataaccaacataagctatgtaaggaagcttaaaaaaaaaacat |
5972065 |
T |
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| Q |
305 |
ataagctgtgcaaggagatgattgaaaagtaact |
338 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
5972066 |
ataagctgtgcaaggagatgattgaaaagtaact |
5972099 |
T |
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