View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11265_low_12 (Length: 348)
Name: NF11265_low_12
Description: NF11265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11265_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 16 - 334
Target Start/End: Complemental strand, 1431940 - 1431620
Alignment:
| Q |
16 |
tctcttaatgttgctgttatttct--tttgaaactttgtaattttagggcttttgttgaaacattttaaaagcttttccatttatcaannnnnnnnnn-c |
112 |
Q |
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| T |
1431940 |
tctcttaatgttgctgttatttctcttttgaaactttgtaattttagggcttttgttgaaacattttaaaagcttttccatttatcattttttttttttc |
1431841 |
T |
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| Q |
113 |
aatttcacctcctctgtcataatagttttctcaagtgcttcttggtttccctagatgtttctcaaattctacaaggtaagtttaaaatttaatattgatc |
212 |
Q |
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| T |
1431840 |
aatttcaccgcctctgtcataatagttttctcaactgcttcttggtttccctagatgtttctcaagttctacaaggtaagtttaaaatttaatattgatc |
1431741 |
T |
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| Q |
213 |
aattcgtataggatactgattagtagaattttctatttaaataactgataataaattacaatacagtgctaatttagaaaaaccttggctacactgcctc |
312 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
1431740 |
aattcgtataggatactaattagtagaattttctatttaaataacttataataaattacaatacagtgctaatttag-aaaaccttggctacactgcctc |
1431642 |
T |
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| Q |
313 |
tactttactttcatatatcttt |
334 |
Q |
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|||||||||||||||||||||| |
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| T |
1431641 |
tactttactttcatatatcttt |
1431620 |
T |
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