View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11265_low_13 (Length: 343)
Name: NF11265_low_13
Description: NF11265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11265_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 150; Significance: 3e-79; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 3 - 175
Target Start/End: Original strand, 10660323 - 10660496
Alignment:
| Q |
3 |
tggagaag-cagagagaactactagaaatatagcttagtcaaatagttggaatgttcatttgcctgagataatagaaataatatacgttgacaggttgat |
101 |
Q |
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| T |
10660323 |
tggagaagtcagagagaactactagaaagatagcttagtcaaatagttggaatgttcatttgcctgagataatagaaataatatacgttgaaaggttgat |
10660422 |
T |
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| Q |
102 |
atcatttcccataaaaatgattacaattgttgaacttccactcacttatttgattttattattttagagaaatg |
175 |
Q |
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| T |
10660423 |
atcatttcccataaaaatgattgcaattgttgaacttccactctcttatttgattttattattttagagaaatg |
10660496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 187 - 328
Target Start/End: Original strand, 10660538 - 10660679
Alignment:
| Q |
187 |
taaatatatttgaaaatgtggcaacaagctaagtcaatgaaacaaattctcaagtagttgaacgcgttgtgcatatgttagaagtggttggtcatgtttg |
286 |
Q |
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| T |
10660538 |
taaatatatttgaaaatgtggcaacaagctaagtcaatgaaacaaattctcaaatagttgaacgcgttgtgcatatgttagaagtgattggtcatgtttg |
10660637 |
T |
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| Q |
287 |
tttcagtgtgaaagtggtgacacgtctaatctgagaggtgtt |
328 |
Q |
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| T |
10660638 |
tttcagtgtgaaagtggtgacacttctaatctgagaggtgtt |
10660679 |
T |
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