View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11265_low_17 (Length: 297)
Name: NF11265_low_17
Description: NF11265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11265_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 15 - 232
Target Start/End: Complemental strand, 34329415 - 34329198
Alignment:
| Q |
15 |
atgaatgcaatgcaatatttgtgatataaaacaagagtctccaatgtttttatcaattaattttattggtcatccttctttccataatttccaaacctgn |
114 |
Q |
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| T |
34329415 |
atgaatgcaatgcaatatttgtgatataaaacaagagtctccaatgtttttatcaattaattttattggtcatccttctttccataatttccaaacctga |
34329316 |
T |
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| Q |
115 |
nnnnnnnntttgaatttcttgtaatacaagaaacagattttatgatacatgtgaattagcac-aaaaaataataataatcatatacttacatagcctatg |
213 |
Q |
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| T |
34329315 |
aaaaaaaa-ttgaatttcttgtaatacaagaaacagattttatgatacatgtgaattagcacaaaaaaataataataatcatatacttatatagcctatg |
34329217 |
T |
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| Q |
214 |
agattatgggtttggtttt |
232 |
Q |
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| T |
34329216 |
agattatgggtttggtttt |
34329198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 229 - 281
Target Start/End: Complemental strand, 34328716 - 34328664
Alignment:
| Q |
229 |
ttttaactacacttaacaatctaattagacttattggatccataccaaagata |
281 |
Q |
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| T |
34328716 |
ttttaactacacttaacaatctaattagacttattggatccataccaaagata |
34328664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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