View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11265_low_19 (Length: 276)
Name: NF11265_low_19
Description: NF11265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11265_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 11 - 263
Target Start/End: Original strand, 42206598 - 42206850
Alignment:
| Q |
11 |
cagagagaaacaatgaccttcaggattggcgtggtgacagtcgtaacaaaagaaggtcttcgtcgtttgttgaagagaacgactattctgcttcattcca |
110 |
Q |
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| T |
42206598 |
cagagagaaacaatgaccttcaggattggcgtggtgacagtcgtaacaaaagaaggtcttcgtcgtttgttgaagagaacgactattctgcttcattcca |
42206697 |
T |
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| Q |
111 |
tttggatgctaacagctggttgcctttttggttgtgtttagtgacaagctcctactttctgttgagggacaatgtcaattttttcagcagcagcagagta |
210 |
Q |
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| T |
42206698 |
tttggatgctaacagctggttgcctttttggttgtgtttagtgacaagctcctactttctgttgagggacaatatcaattttttcagcagcagcagagta |
42206797 |
T |
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| Q |
211 |
aaatatgaagagaatgtttctttacataacaaaagcattccaaatgaaagaag |
263 |
Q |
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| T |
42206798 |
aaatatgaagagaatgtttctttacataacaaaagcattccaaatgaaagaag |
42206850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 14 - 262
Target Start/End: Original strand, 42213434 - 42213682
Alignment:
| Q |
14 |
agagaaacaatgaccttcaggattggcgtggtgacagtcgtaacaaaagaaggtcttcgtcgtttgttgaagagaacgactattctgcttcattccattt |
113 |
Q |
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| T |
42213434 |
agagaaacactgatcttcgtgaatgccgtggtgaccgtggtaacagaagaaagtcttcgccgtttgttgaagagaatgactattctgcttcattcaattc |
42213533 |
T |
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| Q |
114 |
ggatgctaacagctggttgcctttttggttgtgtttagtgacaagctcctactttctgttgagggacaatgtcaattttttcagcagcagcagagtaaaa |
213 |
Q |
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| T |
42213534 |
tggtgcgaacatctggttggctttctggttgtgtttagtaacaagctcctactttctgttgagcaaaaaagtcaactttttcagtggctgcagagttaaa |
42213633 |
T |
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| Q |
214 |
tatgaagagaatgtttctttacataacaaaagcattccaaatgaaagaa |
262 |
Q |
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| T |
42213634 |
cctgaagagaatgcttctttagctaacagaagcattccaaatgaaagaa |
42213682 |
T |
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