View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11265_low_2 (Length: 649)
Name: NF11265_low_2
Description: NF11265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11265_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 533; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 19 - 636
Target Start/End: Complemental strand, 52981990 - 52981356
Alignment:
| Q |
19 |
ttctggacccatctgctggattcaatttcggttgaagacttcttgttgggtaaatatgcctaggtttaaatccaattttatagtttaattttttgttccg |
118 |
Q |
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| T |
52981990 |
ttctggacccatctgctggattcaacttcggatgaagacttcttgttgggtaaatatgcctaggtttaaatccaattttatagtttaattttttgttccg |
52981891 |
T |
|
| Q |
119 |
ctatgtttactaaactaatcatttttaataattgcaagatcttggttagctggagtaggattgatgctctggggtcgagtttggggagta---------- |
208 |
Q |
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| T |
52981890 |
ctatgtttactaaactaatcatttttaataattgcaagatcttggttagctggagtaggattgatgctttggggtcgagtttggggagtaggggttaaac |
52981791 |
T |
|
| Q |
209 |
----aaactagatgtggcgtacaaagcaaagaggggacaacaaagaattttggagtatgttttaataatactataatagatgtttgtaatcaagattctt |
304 |
Q |
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| T |
52981790 |
acttaaactagatgtggcgtacaaagcaaagaggggacaacaaagaattttggagtatgttttaataatactataatagatgtttgtaatcaggattctt |
52981691 |
T |
|
| Q |
305 |
aaaataaagcattttcaattgaaatcaagtcaaaattatctaatttactttgtagaatgcaaataaattttaacaatttcaattttgaaaaaattacctc |
404 |
Q |
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| T |
52981690 |
aaagtaaagcattttcaattgaaatcaagtcaaaattatctaatttactttgtagaatgcaaataaattttaacaatttcaattttgaaaaaattatctc |
52981591 |
T |
|
| Q |
405 |
atcaatgcaacaataacaaatatattcgtatttttctat--aagataaacatgcattaagataaacaacaaaattatctc-aataccataaaaactttat |
501 |
Q |
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| T |
52981590 |
atcaatgcaacaataacaaatatattcgtatttttctataaaatataaacatgcattaagataaacaacaaaattatctcaaataccataaaaactttat |
52981491 |
T |
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| Q |
502 |
cttggtttatgtccattttgcacttgacacaatagaatatttaaactcattaaaatagtctctactgcattcaccttaattatagtatatcaacaaattt |
601 |
Q |
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| T |
52981490 |
cttggtttatgtccattttgcacttgacacaatagaatatttaaactcattaaaatagtctctactgcattcaccttaattatagtatatcaacaaattt |
52981391 |
T |
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| Q |
602 |
caatctgctttctctattcttcaactacaggcttc |
636 |
Q |
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| T |
52981390 |
caatctgctttctctattcttcaacaagaggcttc |
52981356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 128 - 204
Target Start/End: Original strand, 55637501 - 55637577
Alignment:
| Q |
128 |
ctaaactaatcatttttaataattgcaagatcttggttagctggagtaggattgatgctctggggtcgagtttgggg |
204 |
Q |
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|||||||||| |||| |||||||||| |||||||||||||| |||||| |||| || ||||||| ||||||||| |
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| T |
55637501 |
ctaaactaattgttttcaataattgcaggatcttggttagcttcagtagggttgactctttggggtcaagtttgggg |
55637577 |
T |
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