View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11265_low_20 (Length: 273)
Name: NF11265_low_20
Description: NF11265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11265_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 38284226 - 38284479
Alignment:
| Q |
1 |
ttatattagttttcgagaatcaaaaccggatacctcttttttcaaactctttcagcgtctcttacctcattaacttattttagcgggg-atgaatgaaaa |
99 |
Q |
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| T |
38284226 |
ttatattagtttccgagaatcaaaaccggatacctcttttttcaaactctttcggcgtctcttacctcattaacctattttagcgggggatgaatgaaaa |
38284325 |
T |
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| Q |
100 |
ttctagtcacatagtatgtttgagaagagaaagaaggattttacacgacattaaatctacccttaacatataannnnnnngaaatatatgagaccaaatt |
199 |
Q |
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| T |
38284326 |
ttctagtcacatagtatgtttgagaagagaaagaaggattttacacgacattaaatctacccttaacatataaattttttgaaatatatgagaccaaatt |
38284425 |
T |
|
| Q |
200 |
aaaatctaaataaacgtaagagccaaagtacattaattattaagcataaattgattat |
257 |
Q |
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| T |
38284426 |
aaaatctaaataaacgtaagagccaaagtac----attattaagcataaattgattat |
38284479 |
T |
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