View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11265_low_24 (Length: 251)
Name: NF11265_low_24
Description: NF11265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11265_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 36926268 - 36926024
Alignment:
| Q |
1 |
cttatttccttccaccaaaattgaagttccgagtctttcttgatcgagtcctcatccttgtagtaaatggagcagtagtctttaacccatgtcttgatgg |
100 |
Q |
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| T |
36926268 |
cttatttccttccaccaagattgaagttccgagtctttcttgattgagtcctcatccttgtagtaaatggagcagtagtctttaacccatgtcttgatgg |
36926169 |
T |
|
| Q |
101 |
caaaccaaatctccagtccatcaactgcataagggtaatcctcgattaataatcgaagaccgtatggcgaagttgagtccttaacagccattcctctgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36926168 |
caaaccaaatctccagtccatcaactgcataagggtaatcctcgattaataatcgaagaccgtatggcgaagttgagtccttaacagccattcctctgaa |
36926069 |
T |
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| Q |
201 |
atttgaagaggtgaagcaattgatcaacaccaatattcatctcac |
245 |
Q |
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| T |
36926068 |
atttgaagaggtgaagcaattgatcaacaccaatattcatttcac |
36926024 |
T |
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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 201
Target Start/End: Original strand, 46709328 - 46709523
Alignment:
| Q |
6 |
ttccttccaccaaaattgaagttccgagtctttcttgatcgagtcctcatccttgtagtaaatggagcagtagtctttaacccatgtcttgatggcaaac |
105 |
Q |
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| T |
46709328 |
ttccttccaccaagattgtagttctgcatctttctttaccgtgtcatcattcttgtagtaaaaggaacagtagtcctgaacccatgtgttgattgcaaac |
46709427 |
T |
|
| Q |
106 |
caaatctccagtccatcaactgcataagggtaatcctcgattaataatcgaagaccgtatggcgaagttgagtccttaacagccattcctctgaaa |
201 |
Q |
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| T |
46709428 |
caaatctctagcccgtccaccgcgtaagggtaatcgttgactattagtcgaaggccatgcggagaagctgaatctttaattgccattcctctgaaa |
46709523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 143
Target Start/End: Original strand, 6262441 - 6262522
Alignment:
| Q |
62 |
agtaaatggagcagtagtctttaacccatgtcttgatggcaaaccaaatctccagtccatcaactgcataagggtaatcctc |
143 |
Q |
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|||| |||||| |||||||| ||||||||||| || ||| |||||| || ||||||||||| ||||||||||||||||| |
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| T |
6262441 |
agtatatggagacgtagtcttgtacccatgtcttaatagcatcccaaatgtcaagtccatcaacagcataagggtaatcctc |
6262522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 146
Target Start/End: Complemental strand, 9606114 - 9606044
Alignment:
| Q |
76 |
tagtctttaacccatgtcttgatggcaaaccaaatctccagtccatcaactgcataagggtaatcctcgat |
146 |
Q |
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| T |
9606114 |
tagtcttggacccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtcctcgat |
9606044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 110
Target Start/End: Original strand, 49608531 - 49608567
Alignment:
| Q |
74 |
agtagtctttaacccatgtcttgatggcaaaccaaat |
110 |
Q |
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| T |
49608531 |
agtagtcctcaacccatgtcttgatggcaaaccaaat |
49608567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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