View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11265_low_27 (Length: 239)
Name: NF11265_low_27
Description: NF11265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11265_low_27 |
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| [»] chr4 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 13 - 239
Target Start/End: Original strand, 36059336 - 36059562
Alignment:
| Q |
13 |
atatactctttgatcgttcccctcttcgataatagtaacttcatcatcagttcaatatcatgagtcaattaaacaacaatcagcaacaagccccatcagt |
112 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
36059336 |
atatactctttgatcgttcacctcttcgataatagtaacttcatcatcagttcaatatcatgagtcaattaaacaacaatcagcaaaaagccccatcagt |
36059435 |
T |
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| Q |
113 |
atcatatccaccacctggtgaggcctattctacacctcaatatgtaactgccccactacctatgggttatccttccaaggatggctctgaagggtacccc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
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| T |
36059436 |
atcatatccaccacctggtgaggcctattctacacctcaatatgtaactgccccaccacctatgggttatccttccaaggatggctctgcagggtacccc |
36059535 |
T |
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| Q |
213 |
caacaaaggattccagaccaaaccact |
239 |
Q |
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||||||||||||||||||||||||||| |
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| T |
36059536 |
caacaaaggattccagaccaaaccact |
36059562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 86 - 235
Target Start/End: Complemental strand, 28862859 - 28862713
Alignment:
| Q |
86 |
caacaatcagcaacaagccccatcagtatcatatccaccacctggtgaggcctattctacacctcaatatgtaactgccccactacctatgggttatcct |
185 |
Q |
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|||||||||||||||||||||| |||||||||||||||| ||||||| |||||| || | | ||||||||||||||||| |||||||||||||||| |
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| T |
28862859 |
caacaatcagcaacaagcccca---gtatcatatccaccacaaggtgagggttattcttcagcaccatatgtaactgccccaccacctatgggttatcct |
28862763 |
T |
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| Q |
186 |
tccaaggatggctctgaagggtacccccaacaaaggattccagaccaaac |
235 |
Q |
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| T |
28862762 |
tccaaggatggctctcaagggtaccctcaacaaaagatttcagaccaaac |
28862713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 87 - 235
Target Start/End: Original strand, 28865391 - 28865530
Alignment:
| Q |
87 |
aacaatcagcaacaagccccatcagtatcatatccaccacctggtgaggcctattctacacctcaatatgtaactgccccactacctatgggttatcctt |
186 |
Q |
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| T |
28865391 |
aacaatcagcaacaaacccca---gtatcatatccaccac------aggcttattcttcagctccatatgtaactgccccaccacctatgggttatcctt |
28865481 |
T |
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| Q |
187 |
ccaaggatggctctgaagggtacccccaacaaaggattccagaccaaac |
235 |
Q |
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| T |
28865482 |
ccaaggatggctctcaagggtaccctcaacaaaagatttcagaccaaac |
28865530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 112 - 239
Target Start/End: Original strand, 15099441 - 15099571
Alignment:
| Q |
112 |
tatcatatccaccacctggtgaggcctattctacacctcaatatgtaactgccccactacctatgggttatccttccaaggatgg---ctctgaagggta |
208 |
Q |
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|||||||||||||||| |||||| ||||||||||| ||| |||||| |||||||||| |||||||||||| ||| | || ||||| ||||||| || |
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| T |
15099441 |
tatcatatccaccaccaggtgagacctattctacatctccatatgttactgccccaccacctatgggttaccctacaaaagatggtccagctgaaggata |
15099540 |
T |
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| Q |
209 |
cccccaacaaaggattccagaccaaaccact |
239 |
Q |
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||| | |||||||||||||||||||||||| |
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| T |
15099541 |
ccctaaccaaaggattccagaccaaaccact |
15099571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 112 - 239
Target Start/End: Original strand, 15110676 - 15110806
Alignment:
| Q |
112 |
tatcatatccaccacctggtgaggcctattctacacctcaatatgtaactgccccactacctatgggttatccttccaaggatgg---ctctgaagggta |
208 |
Q |
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|||||||||||||||| |||||| ||||||||||| ||| |||||| |||||||||| |||||||||||| ||| | || ||||| ||||||| || |
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| T |
15110676 |
tatcatatccaccaccaggtgagacctattctacatctccatatgttactgccccaccacctatgggttaccctacaaaagatggtccagctgaaggata |
15110775 |
T |
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| Q |
209 |
cccccaacaaaggattccagaccaaaccact |
239 |
Q |
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| T |
15110776 |
ccctaaccaaaggattccagaccaaagcact |
15110806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 112 - 239
Target Start/End: Complemental strand, 18617008 - 18616878
Alignment:
| Q |
112 |
tatcatatccaccacctggtgaggcctattctacacctcaatatgtaactgccccactacctatgggttatccttccaaggatgg---ctctgaagggta |
208 |
Q |
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|||||||||||||||| |||||| ||||||||||| ||| |||||| |||||||||| |||||||||||| ||| | || ||||| ||||||| || |
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| T |
18617008 |
tatcatatccaccaccaggtgagacctattctacatctccatatgttactgccccaccacctatgggttaccctacaaaagatggtccagctgaaggata |
18616909 |
T |
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| Q |
209 |
cccccaacaaaggattccagaccaaaccact |
239 |
Q |
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| T |
18616908 |
ccctaaccaaaggattccagaccaaagcact |
18616878 |
T |
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