View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11265_low_28 (Length: 237)
Name: NF11265_low_28
Description: NF11265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11265_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 2507719 - 2507942
Alignment:
| Q |
1 |
atccaacaacaacgaagccttgtcccactaagtatggtggactacatgtattaaacgacactataatgttgtcatatatcatatctatatccaacagtaa |
100 |
Q |
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| T |
2507719 |
atccaacaacaacgaagccttgtcccactaagtatggtggactacatgtattaaacgacactataatgttgtcatatatcatatctatatccaacagtaa |
2507818 |
T |
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| Q |
101 |
aaggtttttatcccaattatgtatattaagtaaacatttacggtttagccgcaaaaaggttttgacctaaataagaatacatcccagattcccacatagc |
200 |
Q |
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| T |
2507819 |
aaggtttttatcccaattatgtatgttaagtaaacatttatggtttagccgcaaaaaggttttgacctaaataagaatacatcccagattcccacatagc |
2507918 |
T |
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| Q |
201 |
ctcacatccactcaagaagaaagt |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
2507919 |
ctcacatccactcaagaagaaagt |
2507942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 8181060 - 8180995
Alignment:
| Q |
5 |
aacaacaacgaagccttgtcccactaagtatggtggactacatgtattaaacgacactataatgtt |
70 |
Q |
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| T |
8181060 |
aacaacaacgaagccttatcccactaagtggggtcggctacatggatcaaatgacactatagtgtt |
8180995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 95
Target Start/End: Original strand, 10422707 - 10422800
Alignment:
| Q |
4 |
caacaacaacgaagccttgtcccactaagtatggtggactacatgtattaaacgacactataatgt--tgtcatatatcatatctatatccaac |
95 |
Q |
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| T |
10422707 |
caacaacaaccaagtcttatcccactaagtaaggttggttacatcaattaaacgacaccacaatgttctgtcatatataatatctctatccaac |
10422800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 32339840 - 32339747
Alignment:
| Q |
4 |
caacaacaacgaagccttgtcccactaagtatggtggactacatgtattaaacgacactataatgt--tgtcatatatcatatctatatccaac |
95 |
Q |
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|||||||||| ||||||| |||||||||||| | ||||||||| || ||||||| | ||||| | | ||||||||||||||| |||||||| |
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| T |
32339840 |
caacaacaaccaagccttatcccactaagtagaatagactacatggatcaaacgacgccataattttctatcatatatcatatctctatccaac |
32339747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 70
Target Start/End: Original strand, 37042667 - 37042731
Alignment:
| Q |
6 |
acaacaacgaagccttgtcccactaagtatggtggactacatgtattaaacgacactataatgtt |
70 |
Q |
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|||||||| ||||||| ||||||||||| ||| | ||||||| || ||||||||| |||||||| |
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| T |
37042667 |
acaacaaccaagccttatcccactaagtcgggtcggctacatggatcaaacgacaccataatgtt |
37042731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 44719362 - 44719426
Alignment:
| Q |
4 |
caacaacaacgaagccttgtcccactaagtatggtggactacatgtattaaacgacactataatg |
68 |
Q |
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|||||||||| ||| ||| |||||||||||| ||| | ||||||| || ||||||||| |||||| |
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| T |
44719362 |
caacaacaaccaagtcttatcccactaagtagggtcggctacatggatcaaacgacaccataatg |
44719426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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