View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11265_low_29 (Length: 229)

Name: NF11265_low_29
Description: NF11265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11265_low_29
NF11265_low_29
[»] chr7 (5 HSPs)
chr7 (90-229)||(11346561-11346700)
chr7 (100-229)||(11517713-11517842)
chr7 (114-213)||(14279595-14279694)
chr7 (152-222)||(9986666-9986736)
chr7 (183-229)||(14204844-14204890)
[»] chr1 (9 HSPs)
chr1 (100-229)||(21218366-21218495)
chr1 (111-223)||(17444426-17444538)
chr1 (100-229)||(22105980-22106110)
chr1 (121-222)||(21018003-21018104)
chr1 (116-222)||(19817930-19818034)
chr1 (165-222)||(17495233-17495290)
chr1 (161-229)||(21092832-21092900)
chr1 (153-215)||(23478671-23478733)
chr1 (159-222)||(22852191-22852254)
[»] chr4 (4 HSPs)
chr4 (100-229)||(15411254-15411383)
chr4 (124-229)||(15452649-15452754)
chr4 (116-222)||(16587264-16587370)
chr4 (152-222)||(10492913-10492983)
[»] scaffold0023 (1 HSPs)
scaffold0023 (100-229)||(96424-96553)
[»] chr8 (6 HSPs)
chr8 (100-229)||(24427562-24427691)
chr8 (100-229)||(21318720-21318850)
chr8 (102-229)||(24117952-24118079)
chr8 (152-229)||(28075748-28075825)
chr8 (100-222)||(24752744-24752866)
chr8 (152-209)||(14991897-14991954)
[»] chr3 (7 HSPs)
chr3 (100-229)||(14760547-14760677)
chr3 (100-225)||(13081199-13081324)
chr3 (111-229)||(4733856-4733973)
chr3 (152-222)||(4872571-4872641)
chr3 (152-222)||(4854578-4854648)
chr3 (152-222)||(4876313-4876383)
chr3 (116-195)||(14636216-14636293)
[»] scaffold0053 (1 HSPs)
scaffold0053 (111-223)||(969-1081)
[»] scaffold0535 (1 HSPs)
scaffold0535 (95-229)||(4332-4466)
[»] scaffold0160 (1 HSPs)
scaffold0160 (100-229)||(7240-7369)
[»] scaffold0049 (1 HSPs)
scaffold0049 (111-213)||(69238-69340)
[»] chr5 (2 HSPs)
chr5 (159-223)||(29674744-29674808)
chr5 (116-222)||(22441307-22441411)
[»] scaffold0231 (1 HSPs)
scaffold0231 (159-223)||(16621-16685)
[»] chr6 (6 HSPs)
chr6 (159-229)||(19957201-19957271)
chr6 (125-226)||(25924592-25924691)
chr6 (153-209)||(24001924-24001980)
chr6 (165-222)||(13534604-13534661)
chr6 (166-222)||(12476262-12476318)
chr6 (167-222)||(15935829-15935884)
[»] scaffold0285 (1 HSPs)
scaffold0285 (116-222)||(17858-17962)
[»] scaffold1485 (1 HSPs)
scaffold1485 (152-222)||(339-409)
[»] scaffold0334 (1 HSPs)
scaffold0334 (116-219)||(6721-6822)


Alignment Details
Target: chr7 (Bit Score: 124; Significance: 6e-64; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 90 - 229
Target Start/End: Original strand, 11346561 - 11346700
Alignment:
Q  90 aatgaagaagttgactatttaaaatttgcttgaacaatcataatcaataaaacaacaagaagcaaatacatgtggaataagattttatcttagaattgag 189  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  11346561 aatgaagaagttgactattgaaaatttgcttgaacaatcataatcaataaaacaacaagaagcaaatatatgtagaataagattttatcttagaattgag 11346660  T
Q  190 agattcgcgatacaaatctttttacacaatcaattattaa 229  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  11346661 agattcacgatacaaatctttttacacaatcaattattaa 11346700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 100 - 229
Target Start/End: Original strand, 11517713 - 11517842
Alignment:
Q  100 ttgactatttaaaatttgcttgaacaatcataatcaataaaacaacaagaagcaaatacatgtggaataagattttatcttagaattgagagattcgcga 199  Q
    |||||||||  |||||||||| |||||||| ||||||| || ||| |||||||||||| ||| |||||||||||||||||||||||||| |||||| |||    
T  11517713 ttgactattggaaatttgcttaaacaatcacaatcaatgaatcaataagaagcaaatatatgaggaataagattttatcttagaattgaaagattcacga 11517812  T
Q  200 tacaaatctttttacacaatcaattattaa 229  Q
    ||||||||||| ||||||||||||| ||||    
T  11517813 tacaaatctttatacacaatcaattgttaa 11517842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 114 - 213
Target Start/End: Complemental strand, 14279694 - 14279595
Alignment:
Q  114 tttgcttgaacaatcataatcaataaaacaacaagaagcaaatacatgtggaataagattttatcttagaattgagagattcgcgatacaaatcttttta 213  Q
    |||||| ||||||||| ||||||| || || ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  14279694 tttgctcgaacaatcacaatcaatgaatcatcaagaagcaaatatatgtggaataagattttatcttagaattgagagattcacgatacaaatcttttta 14279595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 152 - 222
Target Start/End: Original strand, 9986666 - 9986736
Alignment:
Q  152 caaatacatgtggaataagattttatcttagaattgagagattcgcgatacaaatctttttacacaatcaa 222  Q
    |||||| ||||| |||||||||| ||||||||||| ||||||||  |||||||||||| ||| ||||||||    
T  9986666 caaatatatgtgcaataagatttaatcttagaatttagagattcaagatacaaatcttattatacaatcaa 9986736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 183 - 229
Target Start/End: Original strand, 14204844 - 14204890
Alignment:
Q  183 aattgagagattcgcgatacaaatctttttacacaatcaattattaa 229  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||||    
T  14204844 aattgagagattcacgatacaaatcttttaacacaatcaattattaa 14204890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 100 - 229
Target Start/End: Complemental strand, 21218495 - 21218366
Alignment:
Q  100 ttgactatttaaaatttgcttgaacaatcataatcaataaaacaacaagaagcaaatacatgtggaataagattttatcttagaattgagagattcgcga 199  Q
    |||||||||  ||||||||||||||||||| ||||||| || ||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |||    
T  21218495 ttgactattggaaatttgcttgaacaatcacaatcaatgaatcaataagaagcaaatatatgtggaataagattttatcttagaattgagagattcacga 21218396  T
Q  200 tacaaatctttttacacaatcaattattaa 229  Q
    ||||||||||||||| ||||||||| ||||    
T  21218395 tacaaatctttttacccaatcaattgttaa 21218366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 111 - 223
Target Start/End: Complemental strand, 17444538 - 17444426
Alignment:
Q  111 aaatttgcttgaacaatcataatcaataaaacaacaagaagcaaatacatgtggaataagattttatcttagaattgagagattcgcgatacaaatcttt 210  Q
    ||||||||||||||||||| || |||  || ||| ||||| |||| | ||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  17444538 aaatttgcttgaacaatcacaaacaacgaatcaataagaatcaaaaatatgtggaataagattttatcttagaattgagagattcacgatacatatcttt 17444439  T
Q  211 ttacacaatcaat 223  Q
    |||||||||||||    
T  17444438 ttacacaatcaat 17444426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 100 - 229
Target Start/End: Original strand, 22105980 - 22106110
Alignment:
Q  100 ttgactatttaaaatttgcttgaacaatcataatcaataaaacaacaagaagcaaatacatgtggaa-taagattttatcttagaattgagagattcgcg 198  Q
    |||||||||| ||||||||||||| || || || |||| ||  |||||  | |||||| |||||||| ||||||||||||||||||||||||||||| ||    
T  22105980 ttgactatttgaaatttgcttgaataaacacaaacaatgaattaacaaatatcaaatatatgtggaaataagattttatcttagaattgagagattcacg 22106079  T
Q  199 atacaaatctttttacacaatcaattattaa 229  Q
    ||||||||||||| |||||||||||||||||    
T  22106080 atacaaatcttttgacacaatcaattattaa 22106110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 121 - 222
Target Start/End: Complemental strand, 21018104 - 21018003
Alignment:
Q  121 gaacaatcataatcaataaaacaacaagaagcaaatacatgtggaataagattttatcttagaattgagagattcgcgatacaaatctttttacacaatc 220  Q
    ||||||||| ||||||| || |||||||||||||||| ||||||||||  ||| |||||||||||||||||||||  |||||||||||||||| ||||||    
T  21018104 gaacaatcacaatcaatgaatcaacaagaagcaaatatatgtggaatattattatatcttagaattgagagattcatgatacaaatctttttatacaatc 21018005  T
Q  221 aa 222  Q
    ||    
T  21018004 aa 21018003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 116 - 222
Target Start/End: Original strand, 19817930 - 19818034
Alignment:
Q  116 tgcttgaacaatcataatcaataaaacaacaagaagcaaatacatgtggaataagattttatcttagaattgagagattcgcgatacaaatctttttaca 215  Q
    |||| ||||||||| ||||||| || ||| ||||  |||||| || || |||||||||| |||||||||||||||||||| ||||||||||||| ||| |    
T  19817930 tgctcgaacaatcacaatcaatgaatcaaaaaga--caaatatatttgcaataagatttaatcttagaattgagagattcacgatacaaatcttattata 19818027  T
Q  216 caatcaa 222  Q
    |||||||    
T  19818028 caatcaa 19818034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 165 - 222
Target Start/End: Original strand, 17495233 - 17495290
Alignment:
Q  165 aataagattttatcttagaattgagagattcgcgatacaaatctttttacacaatcaa 222  Q
    |||||||||| |||||||||||||||||||| ||||||||||||| ||| ||||||||    
T  17495233 aataagatttaatcttagaattgagagattcacgatacaaatcttattatacaatcaa 17495290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 161 - 229
Target Start/End: Complemental strand, 21092900 - 21092832
Alignment:
Q  161 gtggaataagattttatcttagaattgagagattcgcgatacaaatctttttacacaatcaattattaa 229  Q
    |||||||||||||||||||||||||||||| |||| | ||||||||||||   |||||||||| |||||    
T  21092900 gtggaataagattttatcttagaattgagatattcacaatacaaatctttgagcacaatcaatcattaa 21092832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 153 - 215
Target Start/End: Complemental strand, 23478733 - 23478671
Alignment:
Q  153 aaatacatgtggaataagattttatcttagaattgagagattcgcgatacaaatctttttaca 215  Q
    ||||| ||||| ||| |||||| |||||||||||||||||||| ||||||||||||| |||||    
T  23478733 aaatatatgtgcaatcagatttaatcttagaattgagagattcacgatacaaatcttattaca 23478671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 222
Target Start/End: Original strand, 22852191 - 22852254
Alignment:
Q  159 atgtggaataagattttatcttagaattgagagattcgcgatacaaatctttttacacaatcaa 222  Q
    ||||| |||||||||| ||||| ||||||| |||||| | ||||||||||| ||| ||||||||    
T  22852191 atgtgcaataagatttaatctttgaattgatagattcacaatacaaatcttattatacaatcaa 22852254  T

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Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 100 - 229
Target Start/End: Original strand, 15411254 - 15411383
Alignment:
Q  100 ttgactatttaaaatttgcttgaacaatcataatcaataaaacaacaagaagcaaatacatgtggaataagattttatcttagaattgagagattcgcga 199  Q
    |||||||||  |||||||||| |||||||| ||||||| || ||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |||    
T  15411254 ttgactattggaaatttgcttaaacaatcacaatcaatgaatcaataagaagcaaatatatgtggaataagattttatcttagaattgagagattcacga 15411353  T
Q  200 tacaaatctttttacacaatcaattattaa 229  Q
    ||||||||||| ||||||||||||| ||||    
T  15411354 tacaaatctttatacacaatcaattgttaa 15411383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 124 - 229
Target Start/End: Original strand, 15452649 - 15452754
Alignment:
Q  124 caatcataatcaataaaacaacaagaagcaaatacatgtggaataagattttatcttagaattgagagattcgcgatacaaatctttttacacaatcaat 223  Q
    |||||| ||||||| || ||| |||||||||||| || |||||||| ||||||||||||||||||||||||| ||||| |||||||| |||| |||||||    
T  15452649 caatcacaatcaatgaatcaataagaagcaaatatatttggaataatattttatcttagaattgagagattcacgatataaatctttatacaaaatcaat 15452748  T
Q  224 tattaa 229  Q
    | ||||    
T  15452749 tgttaa 15452754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 116 - 222
Target Start/End: Complemental strand, 16587370 - 16587264
Alignment:
Q  116 tgcttgaacaatcataatcaataaaacaacaagaagcaaatacatgtggaataagattttatcttagaattgagagattcgcgatacaaatctttttaca 215  Q
    |||| ||||||||| || |||| || ||| ||||  |||||| ||||| ||||| |||| |||||||||||||||||||| ||||||||||||| ||| |    
T  16587370 tgctcgaacaatcacaaacaatgaatcaaaaagagacaaatatatgtgcaataatatttaatcttagaattgagagattcacgatacaaatcttattata 16587271  T
Q  216 caatcaa 222  Q
    |||||||    
T  16587270 caatcaa 16587264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 152 - 222
Target Start/End: Complemental strand, 10492983 - 10492913
Alignment:
Q  152 caaatacatgtggaataagattttatcttagaattgagagattcgcgatacaaatctttttacacaatcaa 222  Q
    |||||| ||||| |||||||||| |||||||||||||||||||| ||||||||||| | ||| ||||||||    
T  10492983 caaatatatgtgcaataagatttaatcttagaattgagagattcacgatacaaatcctattatacaatcaa 10492913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 100 - 229
Target Start/End: Original strand, 96424 - 96553
Alignment:
Q  100 ttgactatttaaaatttgcttgaacaatcataatcaataaaacaacaagaagcaaatacatgtggaataagattttatcttagaattgagagattcgcga 199  Q
    |||||||||  || |||||| ||| ||||| ||||||| || |||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||    
T  96424 ttgactattggaattttgctcgaaaaatcacaatcaatgaatcaacaagaagaaaatatatgtggaataagattttatcttagaattgagagattcacga 96523  T
Q  200 tacaaatctttttacacaatcaattattaa 229  Q
    |||||||||||||| |||||||| ||||||    
T  96524 tacaaatctttttatacaatcaaatattaa 96553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 100 - 229
Target Start/End: Complemental strand, 24427691 - 24427562
Alignment:
Q  100 ttgactatttaaaatttgcttgaacaatcataatcaataaaacaacaagaagcaaatacatgtggaataagattttatcttagaattgagagattcgcga 199  Q
    |||||||||| ||||||||||||||||||| || |||| ||  |||||  | |||||| ||||||||||||||||||||| ||||||||||||||| |||    
T  24427691 ttgactatttgaaatttgcttgaacaatcacaaccaatgaattaacaaataacaaatatatgtggaataagattttatctcagaattgagagattcacga 24427592  T
Q  200 tacaaatctttttacacaatcaattattaa 229  Q
    |||||||||||| |||||||||||||||||    
T  24427591 tacaaatcttttgacacaatcaattattaa 24427562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 100 - 229
Target Start/End: Complemental strand, 21318850 - 21318720
Alignment:
Q  100 ttgactatttaaaatttgct-tgaacaatcataatcaataaaacaacaagaagcaaatacatgtggaataagattttatcttagaattgagagattcgcg 198  Q
    |||||||||| || |||||| | |||||||| || |||| ||  |||||| | |||||| ||||||||||||||||||||||||||||||||||||| ||    
T  21318850 ttgactatttgaattttgctataaacaatcacaaacaatgaattaacaagtatcaaatatatgtggaataagattttatcttagaattgagagattcacg 21318751  T
Q  199 atacaaatctttttacacaatcaattattaa 229  Q
    ||||||||||||| |||||||||||||||||    
T  21318750 atacaaatcttttgacacaatcaattattaa 21318720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 102 - 229
Target Start/End: Original strand, 24117952 - 24118079
Alignment:
Q  102 gactatttaaaatttgcttgaacaatcataatcaataaaacaacaagaagcaaatacatgtggaataagattttatcttagaattgagagattcgcgata 201  Q
    |||||||| ||||||||||||||||||| || |||| ||  |||||  | |||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  24117952 gactatttgaaatttgcttgaacaatcacaaacaatgaattaacaaatatcaaatatatgtggaataagattttatcttagaattgagagattcacgata 24118051  T
Q  202 caaatctttttacacaatcaattattaa 229  Q
    ||||| |||| | |||||||| ||||||    
T  24118052 caaatattttgatacaatcaactattaa 24118079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 152 - 229
Target Start/End: Original strand, 28075748 - 28075825
Alignment:
Q  152 caaatacatgtggaataagattttatcttagaattgagagattcgcgatacaaatctttttacacaatcaattattaa 229  Q
    |||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||    
T  28075748 caaatatatgtggaataagattttatcttagaattgagagattcacaatacaaatcttttgacacaatcaattattaa 28075825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 100 - 222
Target Start/End: Complemental strand, 24752866 - 24752744
Alignment:
Q  100 ttgactatttaaaatttgcttgaacaatcataatcaataaaacaacaagaagcaaatacatgtggaataagattttatcttagaattgagagattcgcga 199  Q
    |||||||||  || ||||||  |||||||| ||||||| || ||||| ||| |||||| |  |||||| |||||||||||||  |||||||||||| |||    
T  24752866 ttgactattggaattttgctcaaacaatcacaatcaatgaatcaacaggaatcaaatatacatggaatgagattttatcttaatattgagagattcacga 24752767  T
Q  200 tacaaatctttttacacaatcaa 222  Q
    |||| ||||||||| ||||||||    
T  24752766 tacacatctttttatacaatcaa 24752744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 152 - 209
Target Start/End: Original strand, 14991897 - 14991954
Alignment:
Q  152 caaatacatgtggaataagattttatcttagaattgagagattcgcgatacaaatctt 209  Q
    |||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  14991897 caaatatatgtggaataagatttaatcttagaattgagagattcacgatacaaatctt 14991954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 100 - 229
Target Start/End: Original strand, 14760547 - 14760677
Alignment:
Q  100 ttgactatttaaaatttgcttgaacaatcataatcaataaaacaacaagaagcaaatacatgtggaataagattttatcttagaattgagagattcgcga 199  Q
    |||||||||| ||||||||||||||||||| || |||| | | |||||  | |||||| ||||||||||||||||||||||||||||||||||||| |||    
T  14760547 ttgactatttgaaatttgcttgaacaatcacaaccaatgatataacaaatatcaaatatatgtggaataagattttatcttagaattgagagattcacga 14760646  T
Q  200 tacaaatctttt-tacacaatcaattattaa 229  Q
    ||||||| |||| ||||||||||||||||||    
T  14760647 tacaaatattttgtacacaatcaattattaa 14760677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 100 - 225
Target Start/End: Complemental strand, 13081324 - 13081199
Alignment:
Q  100 ttgactatttaaaatttgcttgaacaatcataatcaataaaacaacaagaagcaaatacatgtggaataagattttatcttagaattgagagattcgcga 199  Q
    |||| ||||| ||||||||||||||||||| || |||| ||  |||||  | |||||| ||||||||||||||||||||||||||||||||||||| |||    
T  13081324 ttgattatttgaaatttgcttgaacaatcacaaccaatgaattaacaaataacaaatatatgtggaataagattttatcttagaattgagagattcacga 13081225  T
Q  200 tacaaatctttttacacaatcaatta 225  Q
    |||||||||||| |||||||||||||    
T  13081224 tacaaatcttttgacacaatcaatta 13081199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 111 - 229
Target Start/End: Complemental strand, 4733973 - 4733856
Alignment:
Q  111 aaatttgcttgaacaatcataatcaataaaacaacaagaagcaaatacatgtggaataagattttatcttagaattgagagattcgcgatacaaatcttt 210  Q
    ||||||||||||||||||| || |||| ||  |||||    |||||| |||| |||||| ||||||||||||| || |||||||| ||||||||||||||    
T  4733973 aaatttgcttgaacaatcacaaacaatgaattaacaaatgtcaaatatatgttgaataaaattttatcttaga-ttaagagattcacgatacaaatcttt 4733875  T
Q  211 ttacacaatcaattattaa 229  Q
    |  ||||||||||||||||    
T  4733874 tgtcacaatcaattattaa 4733856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 152 - 222
Target Start/End: Complemental strand, 4872641 - 4872571
Alignment:
Q  152 caaatacatgtggaataagattttatcttagaattgagagattcgcgatacaaatctttttacacaatcaa 222  Q
    |||||| ||||| ||| |||||| |||||||||||||||||||| ||||||||||||| ||| ||||||||    
T  4872641 caaatatatgtgcaatgagatttaatcttagaattgagagattcacgatacaaatcttattatacaatcaa 4872571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 152 - 222
Target Start/End: Complemental strand, 4854648 - 4854578
Alignment:
Q  152 caaatacatgtggaataagattttatcttagaattgagagattcgcgatacaaatctttttacacaatcaa 222  Q
    |||||| ||||| ||| ||| || |||||||||||||||||||| ||||||||||||| ||| ||||||||    
T  4854648 caaatatatgtgcaatgagacttaatcttagaattgagagattcacgatacaaatcttattatacaatcaa 4854578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 152 - 222
Target Start/End: Complemental strand, 4876383 - 4876313
Alignment:
Q  152 caaatacatgtggaataagattttatcttagaattgagagattcgcgatacaaatctttttacacaatcaa 222  Q
    |||||| ||||| ||| ||| || |||||||||||||||||||| ||||||||||||| ||| ||||||||    
T  4876383 caaatatatgtgcaatgagacttaatcttagaattgagagattcacgatacaaatcttattatacaatcaa 4876313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 116 - 195
Target Start/End: Original strand, 14636216 - 14636293
Alignment:
Q  116 tgcttgaacaatcataatcaataaaacaacaagaagcaaatacatgtggaataagattttatcttagaattgagagattc 195  Q
    |||| ||||||||| ||||||| || ||| ||||  |||||| ||||| |||||||||| ||||||||||||||||||||    
T  14636216 tgctcgaacaatcacaatcaatgaatcaaaaaga--caaatatatgtgaaataagatttaatcttagaattgagagattc 14636293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 111 - 223
Target Start/End: Complemental strand, 1081 - 969
Alignment:
Q  111 aaatttgcttgaacaatcataatcaataaaacaacaagaagcaaatacatgtggaataagattttatcttagaattgagagattcgcgatacaaatcttt 210  Q
    |||||||||||||||||||  | |||| || ||| ||||| |||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  1081 aaatttgcttgaacaatcacgaacaatgaatcaataagaatcaaaaatatgtggaataagattttatcttagaattgagagattcacgatacaaatcttt 982  T
Q  211 ttacacaatcaat 223  Q
    |||||||||||||    
T  981 ttacacaatcaat 969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0535 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0535
Description:

Target: scaffold0535; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 95 - 229
Target Start/End: Complemental strand, 4466 - 4332
Alignment:
Q  95 agaagttgactatttaaaatttgcttgaacaatcataatcaataaaacaacaagaagcaaatacatgtggaataagattttatcttagaattgagagatt 194  Q
    |||| |||||| ||| |||||| |||||||||||| || |||| ||  |||||  | |||||| || |||||||||||||||||||||||||||||||||    
T  4466 agaaattgactgtttgaaattttcttgaacaatcacaaccaatgaattaacaaataacaaatatatctggaataagattttatcttagaattgagagatt 4367  T
Q  195 cgcgatacaaatctttttacacaatcaattattaa 229  Q
    | ||||||||||||||| |||||||||||||||||    
T  4366 cacgatacaaatcttttgacacaatcaattattaa 4332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 100 - 229
Target Start/End: Complemental strand, 7369 - 7240
Alignment:
Q  100 ttgactatttaaaatttgcttgaacaatcataatcaataaaacaacaagaagcaaatacatgtggaataagattttatcttagaattgagagattcgcga 199  Q
    |||||||||| ||||||||||||| ||||| ||  ||| || ||||||  | |||||| ||||||||||||| ||||||||||||||||||||||| |||    
T  7369 ttgactatttgaaatttgcttgaataatcacaaataatgaatcaacaaataccaaatatatgtggaataagaatttatcttagaattgagagattcacga 7270  T
Q  200 tacaaatctttttacacaatcaattattaa 229  Q
    ||||||||||| | ||||||||||||||||    
T  7269 tacaaatctttgtgcacaatcaattattaa 7240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 111 - 213
Target Start/End: Original strand, 69238 - 69340
Alignment:
Q  111 aaatttgcttgaacaatcataatcaataaaacaacaagaagcaaatacatgtggaataagattttatcttagaattgagagattcgcgatacaaatcttt 210  Q
    ||||||||||||||||||| || |||| || ||| ||||| ||||   ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  69238 aaatttgcttgaacaatcacaaacaatgaatcaataagaatcaaaactatgtggaataagattttatcttagaattgagagattcacgatacaaatcttt 69337  T
Q  211 tta 213  Q
    |||    
T  69338 tta 69340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 29674744 - 29674808
Alignment:
Q  159 atgtggaataagattttatcttagaattgagagattcgcgatacaaatctttttacacaatcaat 223  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  29674744 atgtggaataagattttatcttagaattgagagattcacgatacaaatctttttacacaatcaat 29674808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 116 - 222
Target Start/End: Original strand, 22441307 - 22441411
Alignment:
Q  116 tgcttgaacaatcataatcaataaaacaacaagaagcaaatacatgtggaataagattttatcttagaattgagagattcgcgatacaaatctttttaca 215  Q
    |||| ||||||||| ||||||| || ||| ||||  |||||| ||||| |||||||||| |||||| ||||||||||||| |||| |||||||| ||| |    
T  22441307 tgctcgaacaatcacaatcaatgaatcaaaaaga--caaatatatgtgaaataagatttaatcttataattgagagattcacgattcaaatcttattata 22441404  T
Q  216 caatcaa 222  Q
    |||||||    
T  22441405 caatcaa 22441411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0231 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0231
Description:

Target: scaffold0231; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 16621 - 16685
Alignment:
Q  159 atgtggaataagattttatcttagaattgagagattcgcgatacaaatctttttacacaatcaat 223  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  16621 atgtggaataagattttatcttagaattaagagattcacgatacaaatctttttacacaatcaat 16685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 9e-23; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 159 - 229
Target Start/End: Original strand, 19957201 - 19957271
Alignment:
Q  159 atgtggaataagattttatcttagaattgagagattcgcgatacaaatctttttacacaatcaattattaa 229  Q
    ||||||||||| |||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||    
T  19957201 atgtggaataaaattttatcttagaactgagagattcacaatacaaatctttttacacaatcaattattaa 19957271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 125 - 226
Target Start/End: Original strand, 25924592 - 25924691
Alignment:
Q  125 aatcataatcaataaaacaacaagaagcaaatacatgtggaataagattttatcttagaattgagagattcgcgatacaaatctttttacacaatcaatt 224  Q
    ||||| ||||||| || |||||||||||| ||||  ||||||||||| |||||||||||||||||||||||  |||||||||||||| ||| ||||||||    
T  25924592 aatcacaatcaatgaatcaacaagaagcatatac--gtggaataagaatttatcttagaattgagagattcatgatacaaatcttttcacataatcaatt 25924689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 153 - 209
Target Start/End: Complemental strand, 24001980 - 24001924
Alignment:
Q  153 aaatacatgtggaataagattttatcttagaattgagagattcgcgatacaaatctt 209  Q
    ||||| ||||| |||||||||| |||||||||||||||||||| |||||||||||||    
T  24001980 aaatatatgtgcaataagatttaatcttagaattgagagattcacgatacaaatctt 24001924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 165 - 222
Target Start/End: Original strand, 13534604 - 13534661
Alignment:
Q  165 aataagattttatcttagaattgagagattcgcgatacaaatctttttacacaatcaa 222  Q
    |||||||||| ||||| |||||||||||||| ||||||||||||| ||| ||||||||    
T  13534604 aataagatttaatctttgaattgagagattcacgatacaaatcttattatacaatcaa 13534661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 166 - 222
Target Start/End: Complemental strand, 12476318 - 12476262
Alignment:
Q  166 ataagattttatcttagaattgagagattcgcgatacaaatctttttacacaatcaa 222  Q
    ||||||||| |||||||||||||||||||| |||||||||| || ||| ||||||||    
T  12476318 ataagatttaatcttagaattgagagattcacgatacaaatattattatacaatcaa 12476262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 222
Target Start/End: Complemental strand, 15935884 - 15935829
Alignment:
Q  167 taagattttatcttagaattgagagattcgcgatacaaatctttttacacaatcaa 222  Q
    |||||||| ||||||||||||||||||||  ||| |||||||| ||| ||||||||    
T  15935884 taagatttaatcttagaattgagagattcaggattcaaatcttattatacaatcaa 15935829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0285 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0285
Description:

Target: scaffold0285; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 116 - 222
Target Start/End: Original strand, 17858 - 17962
Alignment:
Q  116 tgcttgaacaatcataatcaataaaacaacaagaagcaaatacatgtggaataagattttatcttagaattgagagattcgcgatacaaatctttttaca 215  Q
    |||| ||||||||| ||||||| || ||| | ||  |||||| ||||| |||||||||  |||||||||||||||||||| |||| |||||||| ||| |    
T  17858 tgctcgaacaatcacaatcaatgaatcaaaagga--caaatatatgtgaaataagattcaatcttagaattgagagattcacgattcaaatcttattata 17955  T
Q  216 caatcaa 222  Q
    |||||||    
T  17956 caatcaa 17962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1485 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold1485
Description:

Target: scaffold1485; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 152 - 222
Target Start/End: Original strand, 339 - 409
Alignment:
Q  152 caaatacatgtggaataagattttatcttagaattgagagattcgcgatacaaatctttttacacaatcaa 222  Q
    |||||| ||||| ||| ||| || |||||||||||||||||||| ||||||||||||| ||| ||||||||    
T  339 caaatatatgtgcaatgagacttaatcttagaattgagagattcacgatacaaatcttattatacaatcaa 409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0334 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 116 - 219
Target Start/End: Original strand, 6721 - 6822
Alignment:
Q  116 tgcttgaacaatcataatcaataaaacaacaagaagcaaatacatgtggaataagattttatcttagaattgagagattcgcgatacaaatctttttaca 215  Q
    |||| ||||||||| ||||||| || ||| ||||  |||||| ||||| |||||||||  ||||||||||| |||||||| |||| |||||||| ||| |    
T  6721 tgctcgaacaatcacaatcaatgaatcaaaaaga--caaatatatgtgaaataagattcaatcttagaattaagagattcacgattcaaatcttattata 6818  T
Q  216 caat 219  Q
    ||||    
T  6819 caat 6822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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