View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11265_low_3 (Length: 603)
Name: NF11265_low_3
Description: NF11265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11265_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 11 - 294
Target Start/End: Original strand, 26257767 - 26258050
Alignment:
| Q |
11 |
cataggaggaggatacacttacgcgacattgtcttgcggatgatggatgagacaatcggttagatttgcttaataggatctaaaataggaagtaggaaat |
110 |
Q |
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| T |
26257767 |
cataggaggaggatacacttacgcgacattgtcttgcggatgatggatgagacaatcggttagatttgcttaataggatctaaaataggaagtaggaaat |
26257866 |
T |
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| Q |
111 |
agtaatttatatttcgccattgtcttagatgatatttctatcattttgttttatagtaacttggatttgaatcactatgatcttcatctatgatatatcg |
210 |
Q |
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| T |
26257867 |
agtaatttatatttcaccattgtcttagatgatatttctatcattttgttttatagtaacttggatttgaatcactatgatcttcatctatgatatatcg |
26257966 |
T |
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| Q |
211 |
acttatacattggtttatgcaaatattttggatgaagcaatctggaattggatggaccgtgtatgcgaagcttgataatgctaa |
294 |
Q |
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| T |
26257967 |
acttatacatcggtttatgcaaatattttggatgaagcaatctggaattggatggaccgtgtatgcgaagcttgataatgctaa |
26258050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 351 - 589
Target Start/End: Original strand, 26258237 - 26258483
Alignment:
| Q |
351 |
aacgagattaaatgactaaaacataagcaaaaaataaatggtaaaatttgttttcttttgttgcaactatctaatttagtgcttccagttgtgatatgtt |
450 |
Q |
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| T |
26258237 |
aacgagattaaatgactaaaacataagcaaaaca-aaatggtaaaatttgttttcttttgttgcaactatctaatttagtgcttccagttgtgata--tt |
26258333 |
T |
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| Q |
451 |
cagttggatgagatataaattgaaaaagagtttata-------------atcattgaggataatttaataacgtttcttcaagtttattctagatgggga |
537 |
Q |
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| T |
26258334 |
cagttggatgagatataaattg--aaagagtttataagtaagtgatatgatcattgaggataatttaataatgtttcttcaagtttattctagatgggga |
26258431 |
T |
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| Q |
538 |
tctttgaagcatattctactagtttggttggtagcattgtaattgtgagatt |
589 |
Q |
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| T |
26258432 |
tctttgaagcatattctactagtttggttggtagcattgtaattgtgagatt |
26258483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 26219029 - 26219113
Alignment:
| Q |
150 |
atcattttgttttatagtaacttggatttgaatcactatgatcttcatctatgatatatcgacttatacattggtttatgcaaat |
234 |
Q |
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| T |
26219029 |
atcattttgttttatgatgacttggatttgaattattttgatgtttatatataatatatcgacttatgtatcagtttatgcaaat |
26219113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 513 - 584
Target Start/End: Original strand, 23396248 - 23396319
Alignment:
| Q |
513 |
tcttcaagtttattctagatggggatctttgaagcatattctactagtttggttggtagcattgtaattgtg |
584 |
Q |
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| T |
23396248 |
tcttctagtttattctagaagaggatcttttaagcatattctactaatttgtttggtatcattgttattgtg |
23396319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 512 - 584
Target Start/End: Original strand, 40987492 - 40987564
Alignment:
| Q |
512 |
ttcttcaagtttattctagatggggatctttgaagcatattctactagtttggttggtagcattgtaattgtg |
584 |
Q |
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| T |
40987492 |
ttcttctagtttattctagaagtggatcttttaagcatattctattagtttgtttgatagtattgttattgtg |
40987564 |
T |
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